RNA id: AMCG00016210


Basic Information

Item Value
RNA id AMCG00016210
length 3761
RNA type mRNA
GC content 0.45
exon number 20
gene id AMCG00016210
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12264274 ~ 12296060 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTTcgtcattttttaaattgtcgaAAATGCACTTCAAAACCTAACCATGTTTCCAATATGTCTGCGTCCACTAAAGCATTGCACTGCGAAGCGTAACACGGTTGTTGAGCGCCGAGTACGCTAACATTTGTTCTTgtatatattgattattatCAGTTTCATAGTTCAAGGAAATGGAGGTGAACCCGCCGAAATATTCGCTGTGACCAACGCAACTCGTGGTCTGCTGTTAAATGTTCAAAGGTTGACAGTTCATTGCTAAGTTCAACATTGGGCATCGGCGTCGTTTCTTTCGTCAAACAAATCTAATACTTTAAAAATTGGAGCGAGTGCCAGAAAATAAGACCATCATGATGACTAGCAAAAGACTGCTGAGTATTTTGAAGCACAGCAAATTAAAGACAATATACAGGAGCGTCACGACCTCCTGGTCTCCGGTGGGAGCTGCTTTCAATGCCAGGCAACACAGGAAACCGGACCTGCTCAGCAAAAATGGGGGTCTGTTTGGAGTCCCAGAACTGAGCTCTCCGGCAGGGTTCGAGGTGGCCCAGGACAAAGCCTTGAAGGAAACGGTGCGGCTGGTAGATGAAGCCTGTACCGGCCCTCCTGGAGCGCAGACTGTGCAGACCTTCGACCGGCTGTCGGACAGCTTGTGCAGAGTGGCCGATTTGGCAGATTTTGTGAAGGTGGCGCACCCAGACCCTGCCTTCAGAGAAGCAGCAGAGAAGACCTGTATTAAGATTGGTACAGTTGTGGAAAAGTTGAACACGAATGTTGACCTCTGTAAAAGTCTAAAAGATTTATTAGATAAGAAAGAAGTTCTGTCATCTCTGGACCCAGAAACAAGAAGAGTGGCAGAACTTTTCATGTTTGATTTTGAGATCAGCGGAATTCATCTAGATAAGGAAAAGCGTAAAAAGGCTGTCAACCTGAATGTCAATCTCCTGGACCTGAACAATGAGTTCCTGATGGGCTCTCATCTCCCCAACAAGATTGACGAACGCGCCCTGCCAGACCACATCCGCCACTGCTTTTCCATCGATGGCAATTACATACAGATTGCAGGGCTGCATGCAGACTCCCCAGATGACCTGGTTCGTGAAGCTGCGTACAAGATCTTCCTGTACCCCAACCCGGAGCTGCTGCGCTGCTTAGAGGAACTGCTGGCATGCAGGAACGAACTGGCTAAACTGGTGGGCTATGAATCCTATGCACACCGAGCTTTAAAAGGGACTATGGCCAAAACCCCAGAGACTGTCATGGAGTTCCTGGAGCTGCTGTCTGAAAAGCTTTTCGACAGAGCAGGGAAAGATTTTGACATGATGAAAGACATGAAGTTGAAACTGAATCCAAGAAATAAAGAACTAATGCCTTGGGACCATCCTTACTACAGTGGGGTCTTGCGTGCCGAAAGGTATAATATTGAGCCCAGCCTGTACAGTCCGTTCTTTTCCCTGGGGGCCTGCATGGAGGGGTTAAATACCCTGTTCAGCCAGCTCTTGGGCGTCTCCTTTCAGGCCGAACAACCGGAGAAGGGAGAGATCTGGTGTGAAGATGTCCGGAAACTGGCTGTGGTTCATGAATCCGAGGGGCTCTTGGGATACATCTACTGTGACTTCTTCCACAGACCTGACAAACCCCACCAGGACTGCCACTTCACGATCCGGGGGGGCCGTCTTGGAGAGGACGGGCACCTGCCCCACCCCACTAAAAACACCCCCACCCTGCTCACCCCCGGCATGATGGAGAACCTCTTCCATGAGATGGGCCACGCCATGCACTCCATGTTGGGCAGGACCCGCTACCAGCACGTCACTGGAACCCGCTGCTCCACAGATTTTGCTGAAGTGCCTTCTATTCTGATGGAGTATTTTGCAAGTGATTACCGCGTGGTGAACCAGTTTGCACGCCATTATCAGACAGGACAGCCTCTGCCTAAAAGCATGGTGTCCCGCCTGTGTGAGTCTAAGAAAGTCTGTGGGGCAGCAGATATGCAACTGCAGGTTTTCTATGCTGTTTTGGATCAAATTTATCACGGAAAGCCCCTGAATCAGTCGACCACAGAGATCCTGAAAGCGACTCAGGAGAAATTCTATGGGTTGCCGTATGTGCCAAATACAGCCTGGCAGTTAAGATTCAGCCACCTTATTGGATATGGAGCTAAATACTACTCATACCTCATGTCCCGGGCTGTGGCCTCCATGCTGTGGAAACAATGCTTCCAGAAGGACCCCTTTGACAGGGAAATGGGAGAGCGGTATCGCAGAGAGATGCTGGCTCATGGTGGTGCCAAGGAGCCCATGCTCATGGTTAAAGGAATGCTTCAGAAGACTCCTTCCACCGCAGAGTTTGTAGATGCCCTGGTTTCAGATTTGAACCCCGATTTTGAGACCTTCATAATGGATTCCGAATGAAGGGTCCttcttgtttcattgttttgtgtttgtgaggtAATATCACACTTACTGATGACCTACCCTACTGTAACTGAcctttaattttcattcagaATAGGGGATATGTGTTCGTGATCTCATCACATTTGTTCCATGCAGCAGAAGGATCTGGGCATGCTGTTTCCCTCATTGCCCAATTTGCATACAACCCAGTTTGGTTTTTGGTTGGAaggagaaagaaggagaaagaagaaatgaACACTAACCACTGAAGATCAAGAAAATAAttgcttaaaatgaaaatattaccGGGATTGGATATTTATGTTTCACCCTTATCCAGACCGTTACtttatttctttacattatttatagtgGGTTTTTTTTGGGATAATCAATCttaaggtaaaaaaatattataaatgatgGTTTCTGTGGGACCACTGGTATTGCTTTTAAACTTTAGTGCTTGTATCTGTCTGTTCTTGTTAACCAGTTTATTTGAGCCGGTAATTTGGAGATATTAATGACTGCTGTGTAAACTTGGGAATCCTCTATCTACCTCAGTGAAGATGGGCCTACTCCCTATTGAATACACTGAGAACCAGAATATTTTGGCATCCTCATATATTTGGTAGTATAGCATAATTAGAGTTGGCCTGGTAGATGTAAGTTACAGGTTGCACATTTGCAGAGAATTGAAACAAAACGTGGGGTTTCTGTCACTTTATATATAAGAGCCGTTTATAAATGAGATGTTCTAAGGGCCTCTCTAGGATTCCTCTAGGTGCGAGTCTATGACATATCAGAATATATGATCAAATCTAACGCTGGAATGTAACGGAGGTGGAGCAGGCGAAGAACTGGCAGGATCTCAATACTGTGCCCCTGTGTCTTTCACTTAGAGGGAAGGGGAACAGCAGGTCTGACCTCCTTTGTCTAAATACTCATTTCAGTGCATACATATGTTTCAGTTCAAGTCTCGAAAAACGGAACACTGTAAATCTGGGCTCTGTCATTGTGCCAGTATTTTGACTTGGAAAGAAAATATGGTGTCTCTGTTTTGTCTAAGGTTTGActgcagggtttaaaaaaaaaaaaaaaaacctgtgacTCACTGAAGCACTGAACTAACTCAGTTTTGGCCTTTCAGTGACTTTTGCTAATCTGCGCTTACGACCACAAAATCAAGTATTACCTGTAATGTCATCTGTTCCAACAAGTTCACCTGGTGATTATTAAAAGGTGTATGTGCTGTTTAACCAATTGACATTCTCTCTGCCTTCCACTGAGTCCTACAGCATTGATGACAAACCTTTTTATAAcacattgtatttactttttactttttttttttttttt

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01410 MIPEP; mitochondrial intermediate peptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14816 lncRNA downstream 25260 12238785 ~ 12239014 (-) True G11996
TU14772 lncRNA downstream 316952 11832428 ~ 11947322 (-) False AMCG00016203
TU14773 lncRNA downstream 356305 11890988 ~ 11907969 (-) False AMCG00016203
TU14679 lncRNA downstream 497697 11766152 ~ 11766577 (-) False AMCG00016194
TU14659 lncRNA downstream 525675 11738345 ~ 11738599 (-) True G11865
TU14864 lncRNA upstream 57100 12353160 ~ 12353381 (-) True G12041
TU14871 lncRNA upstream 58615 12354675 ~ 12355364 (-) True G12046
TU14892 lncRNA upstream 91738 12387798 ~ 12391408 (-) True G12058
TU14937 lncRNA upstream 342433 12638493 ~ 12638698 (-) True G12096
TU15107 lncRNA upstream 801931 13097991 ~ 13100224 (-) True G12235
AMCG00016208 mRNA downstream 27752 12208148 ~ 12236522 (-) True AMCG00016208
AMCG00016204 mRNA downstream 320622 11906076 ~ 11943652 (-) True AMCG00016204
AMCG00016203 mRNA downstream 359440 11890988 ~ 11904834 (-) True AMCG00016203
AMCG00016200 mRNA downstream 378081 11868787 ~ 11886193 (-) True AMCG00016200
AMCG00016199 mRNA downstream 397405 11848284 ~ 11866869 (-) True AMCG00016199
AMCG00016209 mRNA upstream 793 12296853 ~ 12320656 (-) True AMCG00016209
AMCG00016211 mRNA upstream 28762 12324822 ~ 12328442 (-) False AMCG00016211
AMCG00016212 mRNA upstream 64515 12360575 ~ 12376528 (-) True AMCG00016212
AMCG00016217 mRNA upstream 177203 12473263 ~ 12499001 (-) True AMCG00016217
AMCG00016216 mRNA upstream 218298 12514358 ~ 12531045 (-) True AMCG00016216
TU14520 other downstream 1416463 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1416463 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4069842 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8343850 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8725081 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 27101 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 566039 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 566039 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 573780 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1258525 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile