RNA id: AMCG00016215


Basic Information

Item Value
RNA id AMCG00016215
length 1749
RNA type mRNA
GC content 0.45
exon number 12
gene id AMCG00016215
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12385978 ~ 12397053 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAAATGAGCAGCGTGGGGCGGCGGATGGTCACAATAAAGTGATCCGCTGTGCTGCCAGTCTCTGGGGGAGACGGCCTGTTGCGTTAGACCTCATTCTCCAGCTTCCACTGTAGCAAACATGGTCATCAAAGTCTTCTTAGCTACTTCATCGGGGTCCACTGCGATCAAGAAGAAGCAACAGGAGGTGGTGGGGTTCTTGGAGGCCAATAAGATTGACTATGCGCAGATGGACATTGCCTCCAACGAGGAGAACAGAATGTGGATGAGGGAAAATGACTATGAGACGTTCTTTGATGCCAAGGAAGATAATCGAGTTTTTGCATTCCTGGGTCTGGCACCTCCCCCAGGGTCAAAGGAAGCAAAGATGGCAGAACAGGCTCTAATTCTCCAGAATGGGAAAGATCCAGAGGAACACCTTGAAACACCAGCTGAGGAGTGTAATGGTGAAAGTCCCACAGAGGCAGAAGACGGCGAGCAGGAGAGTGAAAAGCAAGAGGCCGCAGAGGAAGTGGAGCAGACCtCAAATGCAGATGACGATCAGGAAGATCAAGAAAACAAGGAGGATGACGATGAACTGCCAGTCAGTGAGGAAGAAGAGGACCAGCCTGTCACTGAGGATGAAGAGGATGCCCCTGTCACAGAGGTAGACTCCTCCTTCACACTCAGTCCAGTGCATGGTTTTGGTCAATGGGGTTGGAAATTGGAGTGgaggaagaggaagaggaagacgaGGAAAAAGAAGATGACCTTGAAGCAGAGGATGAAGCAGAAGATGAATCTTAATGTAATGGAGGTCAGGGCTTCTGTCTGCCTTCACAgttcagCTGGCAGAGGCCCTTTCAGCTCAGATTCAACTCCCTCGCTCCTCCACTTAAAACACACCAGCACCAGTCTTCAGGAAACAACGGCCTTCACCTGGACATGGAACAGTCTGCCTGTCCACTTTTCGTCCGCTTCAAGAAAACCCTTTCCCCACATTAATGGATTTTGAATATTATCTGTGTGGGGAAGTACACTTAATAGATGCCTTAATTGTGTAGCTGCTTACAGCATTATCAAAGCACTTACACTGTACCTAGTAATTGTAATGTCAGAACAGGGGCGTATCTTATTGTACAGAGTTCTATACAGGTTTTCGTGTGCACCAAACTAGATAAAACTAGTTTTTGCCATTATGTGTTTTGTGCAACCTGACACCCACTCTGTATTTTTGCTAAGTATGTTCCCCCCGAATGCAGTTCACTGCCATCAATCGCACCAGGAAGTAACACCGGCACTAAAACAATTTCTTCTTGATGTCATTACAACTCACTGGGGTAAGTTTGCACTAGTTTGACAGTTCCACTCCTCCGAGGGTGGAAAATTGTAGAGCTCGAACTGAAGAAACGCAGAATAGCTCCACAGTATTTGgacatttctttcaaatatttGGCTTGATTACAAGAGACTCACTGGGTTTGTGCCTCCGTCCTTCACCAAATTAAGCCATCCCTACTTTCCCATGGAGTGCCACTGTGTGTGTCTAATTACCACTCCCTAATGGAGGTTGTCActttaaattatgcatattttgGTCAGATGCAGAATGGTAcacaaaaaatgataattttcaGATCtactataaatgtataaaatgttaataaactTTTGTGTCTGAAAATACAGCTTCAGAGGAACATTTTTATTCCCGCCCCCCTCTCATCACCCTTCCAAAAAACAAGTGCAAGGGTTTTAGTAATATATTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14866 lncRNA upstream 10869 12374748 ~ 12375109 (+) True G12043
TU14865 lncRNA upstream 30609 12354675 ~ 12355369 (+) True G12042
TU14859 lncRNA upstream 52866 12332136 ~ 12333112 (+) True G12036
TU14854 lncRNA upstream 57585 12323177 ~ 12328393 (+) True G12032
TU14855 lncRNA upstream 57585 12323177 ~ 12328393 (+) False G12032
TU14906 lncRNA downstream 38083 12435136 ~ 12460283 (+) False AMCG00016213
TU15039 lncRNA downstream 506299 12903352 ~ 12903574 (+) True G12183
TU15068 lncRNA downstream 581225 12978278 ~ 12979516 (+) True G12209
TU15082 lncRNA downstream 645189 13042242 ~ 13100583 (+) True G12214
TU15087 lncRNA downstream 668166 13065219 ~ 13065938 (+) True G12217
AMCG00016207 mRNA upstream 124836 12241643 ~ 12261142 (+) True AMCG00016207
AMCG00016206 mRNA upstream 180319 12173068 ~ 12205659 (+) True AMCG00016206
AMCG00016205 mRNA upstream 276594 12056700 ~ 12109384 (+) True AMCG00016205
AMCG00016202 mRNA upstream 380026 11992972 ~ 12005952 (+) True AMCG00016202
AMCG00016197 mRNA upstream 538114 11837672 ~ 11847864 (+) True AMCG00016197
AMCG00016214 mRNA downstream 3776 12400829 ~ 12407292 (+) True AMCG00016214
AMCG00016213 mRNA downstream 44879 12441932 ~ 12461265 (+) True AMCG00016213
AMCG00016218 mRNA downstream 269130 12666183 ~ 12679044 (+) True AMCG00016218
AMCG00016220 mRNA downstream 285219 12682272 ~ 12691799 (+) True AMCG00016220
AMCG00016221 mRNA downstream 381300 12778353 ~ 12786899 (+) True AMCG00016221
TU14724 other upstream 514243 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 2786822 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2794329 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3159733 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 3285942 9099420 ~ 9100036 (+) True G11509
TU14996 other downstream 381171 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1224826 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1234232 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1238389 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 2040718 14437771 ~ 14438606 (+) True G12587

Expression Profile