RNA id: AMCG00016218


Basic Information

Item Value
RNA id AMCG00016218
length 3606
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00016218
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12666183 ~ 12679044 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCGGCCCCGTGAATCGTCATATCCGTCCCATGGCTATCGGGAAGGTCTTGGAAATAAAGccaatttttgtgtgtgttgttaattAAGAGAGAAGTATCCGGTATGTTGCAGTGTTTGTTCTCTTCCTGAGGTTCGGCTCTTTGTTCCCATCAGGCGAAGGATCGGAAAAGTTTAGCTCAGTCTGCAGCACTTGTCATCATGTTTCACCCAAACACACAGGACTGCGCTGTGATCCATGGCTGCACCCTCTCCGTTTGGATTTAACTTGCGTTTTCCTGGCCATCCCTGCCGTGCTGGCGGACATTGGGGGCACATGAACATGGCCCTACATGTATTctggttggttttgttgtttagGACTTGTAACTCTCAGTTTACTTTCCCCCTCAAATGTTTCCCTGGAAAGTTCATGTCCTCCGTGGATTTGGATCTGAGCCCCCTGCAGAAGAACAACGGGACCCCCACAGATGGGCTCTCTCTGGCTTCAGACCCTGCTGGCCAAGTCAGCTTTTTATCCATGTTAAACAACTTAATGGGCGATTCTGGCAGGGGTTACTATATAGAGATGTCGATTGGGACTCCTGCACAGAAGACTGATGCTGTTCAGACCTGCTGGTCCTTCCCTGAGGAACTGGCGCTGTTCCCCTTGTCCTTAGACGAGACGCTGAAAAActCCACTACCTACACACCCAGTTACAGGTCCGTGTCTGTGAGATACACACAAGGGAATTGGGAAGGGGAACTTGGCACCGACAGAGTTTCTATAACGAAAGGACCAAGTAGCACCATTACTATCAACATTGCTTCCATCCTGACCTCAGACGGTTTCTTCTTGCCAGGGGTGAGCTGGCAAGGTATTCTGGGACTGGCCTACCCAATGCTGGCTAGGCCGGATGCATCGGTGGAGCCTTTCTTCAATTCCTTGGTGGAACAGGCGGCCATTCCCAATGTCTTCTCGCTCCAGATGTGTGGCTCGGGTGTGTCAGCAGCCAGTGATACCGAACCGGCTGTTGGGAGTCTGATCATGGGTGGGATCGAACCAACTCTGTACAAGGGGTCAATTTGGTACACCCCCATCAAACAGGAATGGTACTACCAAGTTGAAATTCTAAAGTTGGAGGTCGGAGGCCAGAATTTAAACCTGGACTGTAAAGAGTACAATGTGGATAAAGCCATTGTCGACAGTGGGACCACTCTCCTGCGTCTTCCTGACAATGTCTTTGCTGCTGTGGTGGGGGCCATTATCCGCACATCCTTGGTCCAACAATTCTCAGATGGCTTCTGGACAGGCACTAAACTGGCATGCTGGGTGAAAGGGGAAACGCCCTGGAAATTCTTCCCCAAGATATCCATCTATCTGAGGGGCATGAACGCCAGCCAATCCTTCCGTGTCACCATAATGCCACAGTTGTATGTTCAGCCCATTGCGGATGTAGATAACACCCTGGACTGTTACCGGTTTGGCATCTCTTCATCTACCAGCGGGCTGGTGATTGGTGCCACGGTCATGGAGGGTTTCTACGTTATCTTTGACAGGGCTCAGAAGAGGGTGGGGTTTGCGGTTAGCACTTGTGCCgAGACAGGAGGCTTGCCCATCTCGGAGATCGCAGGTCCATTCTTGGCGACGGACGTGTCCTCCGACTGCTCCTCGGAGCCGGCCCTGCGGGAGTCCGAGCTGTGGCTCATCTCCTACTCTCTGATGGGCCTGTGCGCCTTCGTGCTGCTCATACTGGTCGtcctcctgctcctgccctGCCGCTGCGGCCGCGGGAACAACCCCGGAGAGCTCAACGACGAGTCATCGCTGGTCCGGAACCGCATCCGATAAACAGGAAGGGTGGTGGAGCGATGGGACAATAAACACTACTGGGATTGCCTGAAACCGAGAGAGCAGATTATTCTGGGAGGAAACCTTGAAAGCAATAAATCGGTTGTTTTTGGGCAATTATTACagctttttaatgattattgGTGCACTGCataatttcataaaaaataagtgCACCATTCTTGGATAACTGACATTTCCACCAAAGATCATAGCCCTACAGAGATCACTTTATTGATGCATATCTGTTGATTTAAAGGATGAGGCACAAAGCCATTCTGACTTCACCAAACACAGAGGGAAGCCAGTTCAAACTCTGCCTTCAGCCGAATAACAAAATCTTAACCTCATTATTGCACTGAAATATACCTTCTAGTGATGCTCGGTTGAATGGTGTTACTGTATTGTTTAATGATAAACATTTAAGATATTGAGATTCTTATTGAAAAGCTTTCGATTGTTCATTTCAGAAGATAAAGTGAACCTGATAGCAGTGCCAGATTTCATGAGAATAGTTCACTTTATGCCATCCTAAGAATAGATTAACCAGCttagaaaatagttttcttGAATCATTCGATTTGTATATGTTCTGTTGTTCAATTGTGTCATGGCTTCTCTCTTGATAATATATTAGCAAGgccttaactgtataaattaaggaaaatatCTATTTGATTTAAAcctgcagtatttatttattggagagAAGCTGACACCCAGTAAGACTATTCTTTGCACATAATTCTGACATTGGAATTTGTTTTCTGGAATTTGGCAGGAGATTCTGGGTTCTCTGTATTGAAGTATTTCATTTTAGAGAAATAACAATCTAAGCTTTGCTCAGTGACTGCAACTGGCGGGCCGAAGTCGTATaattaagatgtatttatttgttgttgatcTTGTGTTTGTGCATATTTAAAAGTGCAATTTGGTTTATCAGCTAGTTTTATTATTGGTGTATTTTTATGATGGAAAAATAGTGGTAACgtcatctgaaaatgtatgaagAATATGTCGGAACTAATCTTAAgggtttttttttatactaCGAAGGTGCGTCTCTGTATTCAATAGTAATTTGCCAGTGTAGTTTGTAGACTTTCTAAAGTAATATTATGAACCTGAATGTTAACACCACAGAATCTGTAGCTCTTAGTGGAGGTCGTTGTAATTCATTGTTTCTGAATTAACCAGTGCAATATGTTTCTATGCcagataacatttatttaaatgtataaaatcaaggTCTGCAATTTTTTTGTTATGGCAGCAATGGCTGTTTGGATGTAATAATTAACCAATTTTATATCTGACAACATCACTGAAATttcacagaaaaatcacagaatgcatacatattttatagcTAATAAAATCAACATGTTACACTCCACTTCCATGTGTGCATACTGAGAAtagaaattgtttgttttgtttgatgttttacttaTAATTTTGTGGGGGAGATtgagaaattatatattagtaaataaatacagcatacaCCTGCATACTTTGTTTAATGGTCTTAACTTGCTACaccaaaaactaacaaaacaacaaaaaagcaatttattttttctgatttgtGGCTTTTGTCAATATGTCAACCCTCCAGTAAAGGTTTTAAGCATTAATAACAGATTCTTAATTCATTATACCACCTTATCAATATTTCATCATGAAATAGGATCCaacttgaattgttttttttacaacagcTTCTCTaccaaaaacaaactatattgtCCTATACAGCAGAGACATGAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K07747 BACE2; beta-site APP-cleaving enzyme 2 (memapsin 1)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14906 lncRNA upstream 205900 12435136 ~ 12460283 (+) False AMCG00016213
TU14866 lncRNA upstream 291074 12374748 ~ 12375109 (+) True G12043
TU14865 lncRNA upstream 310814 12354675 ~ 12355369 (+) True G12042
TU14859 lncRNA upstream 333071 12332136 ~ 12333112 (+) True G12036
TU14854 lncRNA upstream 337790 12323177 ~ 12328393 (+) True G12032
TU15039 lncRNA downstream 224308 12903352 ~ 12903574 (+) True G12183
TU15068 lncRNA downstream 299234 12978278 ~ 12979516 (+) True G12209
TU15082 lncRNA downstream 363198 13042242 ~ 13100583 (+) True G12214
TU15087 lncRNA downstream 386175 13065219 ~ 13065938 (+) True G12217
TU15090 lncRNA downstream 392527 13071571 ~ 13073752 (+) True G12220
AMCG00016213 mRNA upstream 204918 12441932 ~ 12461265 (+) True AMCG00016213
AMCG00016214 mRNA upstream 258891 12400829 ~ 12407292 (+) True AMCG00016214
AMCG00016215 mRNA upstream 269130 12385978 ~ 12397053 (+) True AMCG00016215
AMCG00016207 mRNA upstream 405041 12241643 ~ 12261142 (+) True AMCG00016207
AMCG00016206 mRNA upstream 460524 12173068 ~ 12205659 (+) True AMCG00016206
AMCG00016220 mRNA downstream 3228 12682272 ~ 12691799 (+) True AMCG00016220
AMCG00016221 mRNA downstream 99309 12778353 ~ 12786899 (+) True AMCG00016221
AMCG00016229 mRNA downstream 206582 12885626 ~ 12890771 (+) True AMCG00016229
AMCG00016230 mRNA downstream 281004 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016237 mRNA downstream 341939 13020983 ~ 13021201 (+) True AMCG00016237
TU14724 other upstream 794448 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3067027 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3074534 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3439938 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 3566147 9099420 ~ 9100036 (+) True G11509
TU14996 other downstream 99180 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 942835 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 952241 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 956398 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1758727 14437771 ~ 14438606 (+) True G12587

Expression Profile