RNA id: AMCG00016221


Basic Information

Item Value
RNA id AMCG00016221
length 4680
RNA type mRNA
GC content 0.55
exon number 17
gene id AMCG00016221
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12778224 ~ 12786899 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttgttaCCGTCCGACGTTGCGAGGCTCGTTTTGGGCTATCTACAGCAAGAACGCCTGACTGCCACCTGCCAGGCGTTCATCGTGGAGAGCCCTGATCTGAAGGAGTAtgcagagcacagcacagaggaCGGCTCTATACCCGCCTGCGTGTTTtctttgtttGGAAAAAACCTGACCACCATATTGAATGAATATGTGGCAATTAAAGCAAAAGAACTAATGTCTCATTCTTGCTTTGTTCATGAAGAGACCAGCCAAGAAACACAGGTTCCAGCAATGATGACATCACTATGGAAGAAGTTAGATTTCACTCTCAACCAGATCAGGTGCATGCAGAACTCTCCATCTGTTTCCAACAATCAGAGGCttcGCACACGGAATGGCATCATGAACATGAGGCGACAGAGAGCCCAGGCCTCGCTCCAGTCCCCAGCCTCCTCCGGGCTCCTCTCCATTACCCCCTCATCGGGGCCACAAATCCCCAGCCCCCTGCCAACCCCTCAGGGCATGCTGGGCCACTCCACACCCGTCTGTTACAGCTCTCTGCAGGCCAGACCCTCTCCTCTCTGCGTCAGCCAGCCCCAGAGCCAGGAGCGAAGCCGGGTTATCATCAATGTGAACAGAGATTCCCCTCTTCAGGTTGTAGTTCCTGATCGCAGATTTCACCCGGGACAGTTATCCCCTGGCCGCAGAAAATGtgaCTCTCCAAGGAGGCGGGGGGGAGTGCTGTCTGGGCAACCGAGTGCAGCAGGGAGGGGCCCTCCGGTCTCCagtgtccaatcagcagagcaGCAGAGTGAAGGAGAGCAGGAGACAGTCACAGAGAACTTCCCTcAAATGGTTATAGACAATGCCAGGGAAAAGATACTCAGTGACAAGACTTTGCAAGAAAAACTAGCAGAAAACATCAACAAGTTCTTAGGGAGtgAAAATAACCCACAGACCATGAAACAAGCCACAAGCAGCACCATGCTGCAAGACCAGTCTATTGACGAAATACTAGGCCTTCAGGGGGAAATCCACATGACCGATGACGCCATCCGTGACATTTTGGAGCAGACCGAGTCGGATCCTGCTTTCCAGGCTCTGTTTGACCTGTTTGATTATGggaaaaacagaaacagtgaATCTGATGCTCAAGATGCAGATGCCAGTATCACAGACCCTGCACAGGAGATTGTCCTCTGGGAAGGAGAGTTGACCGAGCCCAATGAAAGCTCCTCTGACATTTGTGATCAAGtcacCAGCTGTGAAGATTCAACATCTGGAGTGGAATCTGCAGCCAGACCGTCAAAGACCAGAAATGAGCTGGATGCCAAAAGCAAGAAAAGCAGGAAAACTCCACACCCGCTCCCAAGCACTTCAAGGACTCTGCAGACCTCCAGTACTTCACACATTACCAATGAACTCCTTTTGACAGCTAGACCTTCAGCCAGTGGGACAGGGCCACCTGGGGCCAGAGTTCCTGGGAGCAACATCAGAACGAGAAGTGCTTCTCGCAGTGTCTTGACTGTGGCAGAGGGCACCAGAAGCAAAGACAGCAGCCCGATGACATCGGACAGAGACGTGTTGAGCTCCTTGCTTTGCGATGAGGAAATAAGCATGGATGTCGATCTGCAGGTTGAAACGGTGGTGTCATCGCAGAGTAAAGTGCAGTCTCCTGCTCTTTTGCCAGATAACCAGAAGAATCTGGATAAAGGACACCAACCTTCAGTTACTGTAGAAAATAATACTCTGCTTTCAGCCTGTGATACAACAGAGTCTACTGTAAGTCTGAACACTGCCACAGCATCCAAAGATGGCCCTCAGCAGCCATCGGGGACCTGTGAGAATCTGGATGGGGCTGATGGGCATATGCCAAGGTCTCAGGCTGATGCCCCTTTTCTTGGAGAGTCCGAACAGACTGCTGCTGCAGATGCAAGCAGAACTTTATCAGATCCACAGCCTCACAGTCCCTTCACCCCAGCTACTCCTCCCTCTGAGAAGACTAGAGCTGCACATTCCCCTGCCGTGGCAGAGTCCTCATCCTCCAACGCCAGCTCAGGGAATGAAAGTGGCGAAGCCACGAGCAGGAGCCAGCTTGGTGACAGTGGGGGAGCTTCTCTCTGCATCACTGAGAACCTGTCTTTACCGACTGCCTTTCCCATGTTGGGATCCATGCCAGGATCTTGCCTGGTGAGCCCCCTGGCCCCAGAACCTGACCCCAGTAAAATTGTCTCCCTGAAGATCATCATAAGTGACGATCCAGATGAACAGTTGGGTGACCCTGTTCTGGCCAGCGCCGTCTCCAGCATCACCAACGAGAGGATCCCCACCATCATCCTCTCCTCCCCTGCCAAGTCACCTGCCAAAGGCCCTGGGTTGGTAGGCTGCCCCATCACCCCAGAAGAGACTGTGCAGGCTGTCAGCTGCTTGCAAAGAGCAGAAGTCTTTCCAGTGGCAGAGCCGAATCCTGTTTCGGTGAAACCTGGAGAGGCAGTAATTGGGTCGCCGGTTGTTGGTTTGGAGGAAAGCATCCAGTTGTCCCTGTCTGGTAGTACAGAAATACAACAGGAGGCTGGTTTCATCCAGCTGTTGCCGGCTTCCACCTCATTTGGAGCCTCCGGCAACTATTTCATTGTGGCGGACCAAACGGCAGTGGGCCAGACTGTGACGCAGCCCAAGGTGATGATGCTTCCCAGCAATGCCGCAATGGGGCAGGTGTCCTCTGCATCACGCATCTTGGCAACGCCCCCTCGCTCCAGGCCCCTGATCTCCATGGCCCAGGGAGTGTCCCAGGGCTACACACAGGGTTCAACACTCTTCATATCCTCTCCAGTTCAGCCCATGTTACAAAGCATGATGGTCCCTGTTTCAGTCGTTGGACAGAACAATTCAGGCAAACTCACGATGCCATCCAAGCAGcaaGTAAAATATCCAGTGAAGcctaaattaaaaccaaaattgGCTCCAAAAGCCAGCACAGACACCGCTTCAGAGACACACAAGCCGAAGCCAGCGGGCCCCTCGCAGACCCTGGGGGCCACTGACAAGCTGAGGCCCACAGAAGCCCCCCTAATGGCACCGTCTCTACTGTTAAGCTCAAGCCCTCAGAGCCTGCGGAGCCACAGGAGGGTGCTGTGTTTTGACGTCCCGGCACCCGAGGAGCACAGCAGTGCTCAAACCAGGGACACTCATGCTCCTTCGCCAACTAAGACACCTGTTCCAGTCAGCACAGCTGCCCCTCCCATTACCCCAACTGCACCAGCCATTACCCCAACTGCACCAGCCAATACCCCAACTGCACCAGCCATTACCCCAACTGCACCAGCCACTACCCCAACTGCACCAGCCACTACCCCAACTGCACCAGCCACTACCCCAACTGCACCAGCCACTACCCCAACTGCACCAGCCATTACCCCAACTGCCCCGCCTGCCTCTTCCCCTGACGCACTGCCTAAAAAAGCCAGTCCCGTGACTCCGCGTGCCAGTGCTAAACTCAAAGCGCTTCAGACAGCAGCGGCGAGAAGCGCCAGTGATCTGGTGGCCAAGAGCAGGCAAGAGGCTGGGAAATCcatggacaaaacaaaaaccgcAGCGGCCAAGAAGGATTCGGACAAAAGCACCAGTGTCCCCAGATCTGGCGATGGCCACAAAGGAGCTCCATCGCAGAGTGATTCTGTGCCGAGGACAAAACCGCCACATTCAGGCAACAGGAGTGACTTTGTGAAACCAGAGGAGTCCAGGAGGAGCTCTgacctgaaaaaaaaatcccagacCTTGGAAAAGAGGGATGATGCGACAACAAGCACAAAGAAAGATGCAACTCAGAGCAGCAAGCCCTTACCTGCTGACCACAGGACTAAATCAAAAGTGACAGCAGGCAGGAAGGAGACGGATCACAGGAGCCGGACAGAGGCGAGTGAAAACCGTGCTGCGAAGGGGAAAGAGGGCCGGTCAGAGAAGAGGAGCTCCTCACAGGAGCCGCCACACGTTACCGCCAATAAAGAGAATGAACTGGAGGGGAGGAAGAGCCAGGAGAAGCCGACCAACGCTCCCCCGACGGCAAGCGATTCCCTTGCTGCCCCTGCAAGCTCTGCTGCCTCCCATAGCAAGACCAGCCCCCTCACGAAACAGGCCACAGAGATGCTCCAGGACATCCAGGGACAGATGTCCACCTCCACGCCATCCAAGAGGCTGGCAGTAGGATGCCCTGAGCTGCCTCTCCCCAGAACCCCCGGGTCGGGTCGCCACTCCGAAGAGCCTCTGGACTGCTTGAGGACCCCCGTGCGCCAGCGGCACGGCAAAGAGGGAGAGGGCACCCCCCGGCACCTGCCTCCACCCGCCACCCCCGACCTGCCCACCTGCAGCCCCGCGAGTGAGGCTGGCAGCGAGAACAGCATCAACATGGCCGCCCACACTCTGATGATCCTGTCTCGTGCCGCCATCGCCAGGACGGGCACCCCTCTGAAGGACAGCGCGCAGCGGCAGGGCACAGCCTCCCCGGGGGCCAAGGGCAGGAAACGGAAACACACGGAACCCCATGCCAGCCCCCCCGGTaagagagagcagcagcagggcgCAGCGTCACCAGGCAGTAAGAAGAAAGCCAAGaaacagaagaagTTGCTGGACTCCTTTCCGGACGACCTGGATGTGGACAAATTCCTATCATCTCTGCACTACGATGAGTGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14906 lncRNA upstream 318070 12435136 ~ 12460283 (+) False AMCG00016213
TU14866 lncRNA upstream 403244 12374748 ~ 12375109 (+) True G12043
TU14865 lncRNA upstream 422984 12354675 ~ 12355369 (+) True G12042
TU14859 lncRNA upstream 445241 12332136 ~ 12333112 (+) True G12036
TU14855 lncRNA upstream 449960 12323177 ~ 12328393 (+) False G12032
TU15039 lncRNA downstream 116453 12903352 ~ 12903574 (+) True G12183
TU15068 lncRNA downstream 191379 12978278 ~ 12979516 (+) True G12209
TU15082 lncRNA downstream 255343 13042242 ~ 13100583 (+) True G12214
TU15087 lncRNA downstream 278320 13065219 ~ 13065938 (+) True G12217
TU15090 lncRNA downstream 284672 13071571 ~ 13073752 (+) True G12220
AMCG00016220 mRNA upstream 86554 12682272 ~ 12691799 (+) True AMCG00016220
AMCG00016218 mRNA upstream 99309 12666183 ~ 12679044 (+) True AMCG00016218
AMCG00016213 mRNA upstream 317088 12441932 ~ 12461265 (+) True AMCG00016213
AMCG00016214 mRNA upstream 371061 12400829 ~ 12407292 (+) True AMCG00016214
AMCG00016215 mRNA upstream 381300 12385978 ~ 12397053 (+) True AMCG00016215
AMCG00016229 mRNA downstream 98727 12885626 ~ 12890771 (+) True AMCG00016229
AMCG00016230 mRNA downstream 173149 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016237 mRNA downstream 234084 13020983 ~ 13021201 (+) True AMCG00016237
AMCG00016231 mRNA downstream 250283 13037182 ~ 13063508 (+) True AMCG00016231
AMCG00016240 mRNA downstream 398135 13185034 ~ 13188393 (+) True AMCG00016240
TU14724 other upstream 906618 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3179197 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3186704 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3552108 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 3678317 9099420 ~ 9100036 (+) True G11509
TU15233 other downstream 834980 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 844386 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 848543 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1650872 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 3697456 16484355 ~ 16486003 (+) True AMCG00016329

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017065 False 4347 mRNA 0.46 17 NC_007126.7 25528290 ~ 25542592 (+)