RNA id: TU14996



Basic Information


Item Value
RNA id TU14996
length 1237
RNA type TUCP
GC content 0.24
exon number 11
gene id AMCG00016221
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12778224 ~ 12786899 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACGCGGTGAATTTCCGCGCCATTTCTGCGGATGTGCCGTACAGCGGggaataagaaaacaaatcaaaatgtttgtgtgtctgctgtcTCTGTGCAACTCAGTAGCACttaaaaactgattaaataaaacatgttgttaCCGTCCGACGTTGCGAGGCTCGTTTTGGCAAGAACGCCTGACTGCCACCTGCCAGGCGTTCATCGTGGAGAGCCCTGATCTGAAGGAGTAtgcagagcacagcacagaggaCGGCTCTATACCCGCCTGCGTGTTTtctttgtttGGAAAAAACCTGACCACCATATTGAATGAATATGTGGCAATTAAAGCAAAAGAGACCAGCCAAGAAACACAGGTTCCAGCAATGATGACATCACTATGGAAGAAGTTAGATTTCACTCTCAACCAGATCAGGTGCATGCAGAACTCTCCATCTGTTTCCAACAATCAGAGGCttcGCACACGGAATGGCATCATGAACATGAGGCGACAGAGAGCCCAGGCCTCGCTCCAGTCCCCAGCCTCCTCCGGGCTCCTCTCCATTACCCCCTCATCGGGGCCACAAATCCCCAGCCCCCTGCCAACCCCTCAGGGCATGCTGGGCCACTCCACACCCGTCTGTTACAGCTCTCTGCAGGCCAGACCCTCTCCTCTCTGCGTCAGCCAGCCCCAGAGCCAGGAGCGAAGCCGGGTTATCATCAATGTGAACAGAGATTCCCCTCTTCAGGTTGTAGTTCCTGATCGCAGATTTCACCCGGGACAGTTATCCCCTGGCCGCAGAAAATGtgaCTCTCCAAGGAGGCGGGGGGGAGTGCTGTCTGGGCAACCGAGTGCAGCAGGGAGGGGCCCTCCGGTCTCCagtgtccaatcagcagagcaGCAGAGTGAAGGAGAGCAGGAGACAGTCACAGAGAACTTCCCTcAAATGGTTATAGACAATGCCAGGGAAAAGATACTCAGTGACAAGACTTTGCAAGAAAAACTAGCAGAAAACATCAACAAGTTCTTAGGGAGtgAAAATAACCCACAGACCATGAAACAAGCCACAAGCAGCACCATGCTGCAAGACCAGTCTATTGACGAAATACTAGGCCTTCAGGGGGAAATCCACATGACCGATGACGCCATCCGTGACATTTTGGAGCAGACCGAGTCGGATCCTGCTTTCCAGGCTCTGTTTGACCTGTTTGATTATGGTAAAACCAAGTGGGAATTATCTGGAAGGTTCTGTGAAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14906 lncRNA upstream 317941 12435136 ~ 12460283 (+) False AMCG00016213
TU14866 lncRNA upstream 403115 12374748 ~ 12375109 (+) True G12043
TU14865 lncRNA upstream 422855 12354675 ~ 12355369 (+) True G12042
TU14859 lncRNA upstream 445112 12332136 ~ 12333112 (+) True G12036
TU14854 lncRNA upstream 449831 12323177 ~ 12328393 (+) True G12032
TU15039 lncRNA downstream 121488 12903352 ~ 12903574 (+) True G12183
TU15068 lncRNA downstream 196414 12978278 ~ 12979516 (+) True G12209
TU15082 lncRNA downstream 260378 13042242 ~ 13100583 (+) True G12214
TU15087 lncRNA downstream 283355 13065219 ~ 13065938 (+) True G12217
TU15090 lncRNA downstream 289707 13071571 ~ 13073752 (+) True G12220
AMCG00016220 mRNA upstream 86425 12682272 ~ 12691799 (+) True AMCG00016220
AMCG00016218 mRNA upstream 99180 12666183 ~ 12679044 (+) True AMCG00016218
AMCG00016213 mRNA upstream 316959 12441932 ~ 12461265 (+) True AMCG00016213
AMCG00016214 mRNA upstream 370932 12400829 ~ 12407292 (+) True AMCG00016214
AMCG00016215 mRNA upstream 381171 12385978 ~ 12397053 (+) True AMCG00016215
AMCG00016229 mRNA downstream 103762 12885626 ~ 12890771 (+) True AMCG00016229
AMCG00016230 mRNA downstream 178184 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016237 mRNA downstream 239119 13020983 ~ 13021201 (+) True AMCG00016237
AMCG00016231 mRNA downstream 255318 13037182 ~ 13063508 (+) True AMCG00016231
AMCG00016240 mRNA downstream 403170 13185034 ~ 13188393 (+) True AMCG00016240
TU14724 other upstream 906489 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3179068 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3186575 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3551979 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 3678188 9099420 ~ 9100036 (+) True G11509
TU15233 other downstream 840015 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 849421 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 853578 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1655907 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 3702491 16484355 ~ 16486003 (+) True AMCG00016329

Expression Profile