RNA id: TU15028


Basic Information

Item Value
RNA id TU15028
length 431
RNA type TUCP
GC content 0.34
exon number 3
gene id AMCG00016226
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12849878 ~ 12870560 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGTGGCAGTATACACCGGCCGACAGGTACTcgagagaagatgaggtctctCCACGTTCTGGTGTTCCTGAGCCTGGCGGCCGCAGTCTGCTCAGCGCCGTTGTTGCCGCCTGCCGCCGATGAAACTGATATGGAGGTGGCGGAGTCTTACCTGACGAAATTCTACAACTTAACTGTTGCTGACGGGCCCATATATAAGCGAAAGTTTAACCCCGAGCTGATTAAGAAGGTGAAAGAGATGCAGAAGTTCTACGGTCTGGCAGTGACAGGGATTGTGGACTCAGATACAGTGGCGGTGATGAAGAAGCCACGCTGTGGAGTCGTTGACATGGACCGATACAGCACATTCCCAGGGAATTTGAAGTGGCCAAGAAACAGTTTGACCTAcagGGTCGTGAACTACACCCCCGACATGTCTGTCTCCGAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14937 lncRNA downstream 223401 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 470691 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 506735 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 508718 12353160 ~ 12353381 (-) True G12041
TU14816 lncRNA downstream 623085 12238785 ~ 12239014 (-) True G11996
TU15107 lncRNA upstream 227431 13097991 ~ 13100224 (-) True G12235
TU15219 lncRNA upstream 672788 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 756695 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 767743 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 767743 13638303 ~ 13639590 (-) False G12358
AMCG00016222 mRNA downstream 19419 12819590 ~ 12842680 (-) True AMCG00016222
AMCG00016225 mRNA downstream 56215 12793808 ~ 12805884 (-) True AMCG00016225
AMCG00016228 mRNA downstream 69902 12786258 ~ 12792197 (-) True AMCG00016228
AMCG00016224 mRNA downstream 84173 12747929 ~ 12777926 (-) True AMCG00016224
AMCG00016223 mRNA downstream 118319 12738751 ~ 12743780 (-) True AMCG00016223
AMCG00016236 mRNA upstream 20418 12890978 ~ 12898310 (-) True AMCG00016236
AMCG00016232 mRNA upstream 36347 12906907 ~ 12932297 (-) True AMCG00016232
AMCG00016235 mRNA upstream 69562 12940122 ~ 12949580 (-) True AMCG00016235
AMCG00016233 mRNA upstream 107716 12978276 ~ 12983296 (-) True AMCG00016233
AMCG00016234 mRNA upstream 190181 13060741 ~ 13062765 (-) True AMCG00016234
TU14856 other downstream 533066 12323161 ~ 12329033 (-) True AMCG00016211
TU14520 other downstream 2014288 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 2014288 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4667667 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8941675 3907759 ~ 3920424 (-) False AMCG00016049
TU15220 other upstream 684025 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 1919643 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3987981 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3987981 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3987981 16858541 ~ 16861179 (-) False G12945

Expression Profile