RNA id: AMCG00016229


Basic Information

Item Value
RNA id AMCG00016229
length 1825
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00016229
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12885626 ~ 12890771 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGTGTATCAGGGCAGCAGAATCCAGAGGCAACATGCAGGTCAGCGCGCTCCTGTTTCTCCTGATAATCGCAGGCTCCTTTACATTTCCGCTGCCTTCACAGGAGTCAGAGAAGGATGAGCACAGCAAGCACGCCGCAGAGACTTACCTCCGCAGGTTCTACGGTCTCCCTCCTCCTGCGCTCCATGGCCTGGGTCGGCCCTCGGACCTCATGCAGGAGAAGATCAGAGAGATGCAAGCCTTCTTCCACCTGAAGGTCACTGGGAATCTAGATGCAGACACACTGGAGGTCATGAAAATGGCTCGCTGTGGGGTTCCCGACGTTAGGGAGTACAATCTCTTCCCCAGGAACCTCAAATGGGACAACACCAATGTGACATTCAGGATTGTAAATTACACCCCAGATCTGAAGCCTCAAGACGTTGATAGGGCCATCCACAATGCGCTCAAAGTATGGAGTGACGTGACGCCTTTGGTTTTCAAGAAGATACATGAAGGCACTGCAGACATCATGATAGCCTTCGGAGCAAAGGAACACGGGGACTTCAATCCTTTTGATGGACCCAACGGCCTGCTAGCACATGCATACCCTCCTGGCAAGAACCTCGGCGGAGACACACACTTTGATGAAGATGAAACGTGGTCAACAGACTCAAGTGGTTACAACTTGTTCATAGTTGCCACCCATGAGTTTGGTCatgctctgggcctggcccacTCGAACGACCCCGGTGCTCTGATGTATCCAGTGTACTCCTACTCCGAGGGCTTTCCTCTCTCTGAGGATGATATGAATGGAATACAGGCCCTCTATGGCCCAAACCCGAATTACCGAAAAGTGAAACCCAAGCCTGATGCACCTGATAAATGTGATCCCATGCTGACTTTCGATGCTGTGACTGAACTCAGAGGGGAAACCATCATCTTTAAAGACAGGTTTTTCTGGCGTCTGCATCCTCAGATGATTGAACCAGAACAAACCCTTATTAAAATGACCTGGCCCTCTCTTCCAAACAAAATTGACGCAGCATACGAATCCCCTGAAAAGGACCTGGTCTTCATATtcagagGTATCAAAATGTGGGCTCTGAATGGATACACTTTGGTTGAAGGCTACCCAAAATATATTCACAAGTTGGGTCTTCCAAAGAGCGTGCGGAGAATAGATGCTGCCGTCTACCTCAAAGAGACCAGGAAGACGCTGCTTTTCACAGATGAGGATTATTGGAGCTATGATGAGAGCAGTGGAACAATGGACAAGGGCTTCCCCAGGTCCATAGAGGACGATTTCCCAGGCATTGGGGAGGAAGTAGATGCTGTTTCCAATCAACATGGCTATCTGTACTTCTACCGTGAACATGTGCAGTTCGAGTACAATTACAGAGCCCGCAGGGTCCTGCGCATCCAGAGGACAAACGCCATCCTCAACTGCTAAAGCACCCAGGGGATGAAAAGATGGCACCATATGCATAATTCAGTGTGAACACAATTTGTATAAAACATGTGCTGAGGCCTTCACGCCTCAGCTGGAATCCTGTGTGTTGACCACGCAGCTCATTGTAAACGCTGGTCTGTTGCCAAAGGTTTTTAACTTATTAAATTATAGAACAATCTGTTTTCATTCAACTGTATTGTTTCATTGGAAGGGTGAGGGTGGATTAAGggatatgtgtttgtgtgaatctAACAATTTTGTTTCCGTGTTCAGATTAAAGATAATTTATAAACCAAAATTGGTGAGAAATAAGCATCTTTCTCTGTGTTGACGAAGAATAAATTGAtcaatgcagtgttttaataaaaGGACAGGATTGTTAACAACTTA

Function

GO: NA

KEGG:

id description
K07994 MMP13; matrix metalloproteinase-13 (collagenase 3)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14906 lncRNA upstream 425343 12435136 ~ 12460283 (+) False AMCG00016213
TU14866 lncRNA upstream 510517 12374748 ~ 12375109 (+) True G12043
TU14865 lncRNA upstream 530257 12354675 ~ 12355369 (+) True G12042
TU14859 lncRNA upstream 552514 12332136 ~ 12333112 (+) True G12036
TU14855 lncRNA upstream 557233 12323177 ~ 12328393 (+) False G12032
TU15039 lncRNA downstream 12581 12903352 ~ 12903574 (+) True G12183
TU15068 lncRNA downstream 87507 12978278 ~ 12979516 (+) True G12209
TU15082 lncRNA downstream 151471 13042242 ~ 13100583 (+) True G12214
TU15087 lncRNA downstream 174448 13065219 ~ 13065938 (+) True G12217
TU15090 lncRNA downstream 180800 13071571 ~ 13073752 (+) True G12220
AMCG00016221 mRNA upstream 98727 12778353 ~ 12786899 (+) True AMCG00016221
AMCG00016220 mRNA upstream 193827 12682272 ~ 12691799 (+) True AMCG00016220
AMCG00016218 mRNA upstream 206582 12666183 ~ 12679044 (+) True AMCG00016218
AMCG00016213 mRNA upstream 424361 12441932 ~ 12461265 (+) True AMCG00016213
AMCG00016214 mRNA upstream 478334 12400829 ~ 12407292 (+) True AMCG00016214
AMCG00016230 mRNA downstream 69277 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016237 mRNA downstream 130212 13020983 ~ 13021201 (+) True AMCG00016237
AMCG00016231 mRNA downstream 146411 13037182 ~ 13063508 (+) True AMCG00016231
AMCG00016240 mRNA downstream 294263 13185034 ~ 13188393 (+) True AMCG00016240
AMCG00016239 mRNA downstream 321287 13212058 ~ 13247016 (+) True AMCG00016239
TU14996 other upstream 103762 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1013891 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3286470 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3293977 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3659381 9223412 ~ 9226245 (+) True G11545
TU15233 other downstream 731108 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 740514 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 744671 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1547000 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 3593584 16484355 ~ 16486003 (+) True AMCG00016329

Expression Profile