RNA id: AMCG00016231


Basic Information

Item Value
RNA id AMCG00016231
length 8684
RNA type mRNA
GC content 0.44
exon number 19
gene id AMCG00016231
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13037182 ~ 13063508 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTCTGCAGCTTTCAGAAGTGGTGCCAGCTTCCTGGACGCCTCGATGTAATCCCAGCTGGTGTCTGTTGTCTTTGCAGTGGGAGCGCATGTGGTTTCTCATCCTCTCCTGCACCTTCTTCCTGCTCctgatttggttttatttctggTGGGAGGCTCACAATGATTACAATGAGTTTAACTGGGTTGGAGACGAGGAGGGGAAGTCTAGGGAAattTTAGCACTATGTCATGTAGCTGTGGGACAGCAGCTAAACCTACACTGGCTCCACAAGATCGGGGTGACGGCCGTGCTGGTGACCACCATGATAGCGGTGATTTCGGTGGAGCAGCTCTGGGGCGAAGAGTGGGGTATCATTTGGATCTCCCTCCAGGCGACCGGCCCTTTCCTGCACATAGGGGCTGTAGCTGCCATTACGATGCTAGCCTGGCTGGTCGCTGGGCAATTTGCCCGTGCAGAGAAATCAATGTTTCAGGCAGTGCTGCTCCTGGCCTACCTGAGTGTCCTGCTGGGACTCTACCTGGTGCCCCTCACCATCACCTCACCCTGCTTCATGGAGAGGAGCCGTCTCAAGCACCGGCCCGATGTCATTGGCCATCAGGGAGCTCCTATGCTTGCTCCCGAAAACACCCTGATGTCATTCCGTAAGGCGTTGCAGCAGAACATCGGTGGACTGGAAGTTGACGTGACCATCAGCCTGGACGGCGTGCCCTTCCTCATGCGAGACCACACCCTGAGGCGGACCACGGATGTGCAGAAGGTCTTTCCCGAGAGGCAGCATGAGGACGCCTCCATGTTCAACTGGACCGACCTCCAGGCCCTCAACTCAGGACAGTGGTTTATTCAGGACGACCCTTTCTGGACGGCACAGTCCCTCTCTGCAAAAGACTACACTCAGGCAGCGAACCAGTCCATCTGCACCCTGAGGGAGCTGCTGCAGCTGGCTGCACGAAACAACAAATCGGTCATCTTCAACCTGCGCCGACCACCTGCCGGGCACCCCTACTACGAGAGCTGGATCAATGTCACCTTGGACACAGTCCGGCAGTCTGGCATACCAGAGGAGCTGGTGATGTGGACCCCAGACTCGGACAGACAGATGGTGAAGAAAATCGCTCCTGGCTTCCAGCAGACCTCGGGGGTGAAGGAGTCCGTGGAGACACTGCGGAGGAAAGGCATCGTCAAACTCAACCTGCGATACAACCAGGCCAGCGCTCAGGAAATCAGGGAGTTCACGGCCAGCAATATCAGCGTCAATCTGTTCAGTGTGAATGATCCCTGGCTCTTCTCTGTGCTGTGGTGCAGTGGGGTGCCTTCTGTCTCCTCAGATGCCCCCCAGATCCTCAAAAAGGTGCCTTATCCCATCTGGCTCATGACTCCAGATGAATACTACCTGATCTGGATAACGACGGATCTTGTTTCTTTTACTATAATAATAGGAATTTTTGTACTCCAAAAGTATCGTCTGGGCAGCATACGCAGCTACAACCCTGAGCAGATAATGCTGAGTGCGGCCGTCAGGAGGTCCAGCCAGGATGTGAAGATCATGAAGGAGAAACTCATCTTTTCAGAAATAAACAACGGCGTGAGCAGCTCGGAGGAGCTCTCGCTGTGCGGGGAGAACGGCTATGATGGGTACACCAACGAAGCCATCACCCCCGTCGACCAGCACGCTCTGAAGATGCGTATTAACTGAGTGGAGACCGCAACACAGAAATCCCTTttacaagaacaagaaaaaacattttaacattttttgtttgtttgttttaacatggTGTTCAGATCACTAAGAAATGGGATAAAAAAAATTTGTTCTCGCTGAGCTACTGACTGACTGTGACACCACGGGAACATTGTTTCCACCCCACTgctttgtacatttgtaaatactGTTCCCTTTTTATTGTTCTTGCGTGAGGTAGAGTTAATTATTAAGATTTGTAAACTACAAGCACTTTTCACAGAAAACTGACAAAATCGGTAACCTACTCTCCTCCGTCTGTGTTTGCCGACGAGCCGGACACGTCTCCTGTGTGACTCTTGTGACCTTCAGTGCGGTGGCTTTCACTCCGGCCAATGGCTTGGTAGAAGACATGGCCACCTTATGGATCgttattactttttttgtctCCTATCCCCATGACAGTGCGAGAATAAGTATACAACCCATATGGCTTAGATTTTAGAAAACCCccctttctttattattatttttttacctggAAAGAATTGTCCTTTCAAATTTTACCTTTGCATACTTCTTGTGCTGTAATGTTGGACATACAGCTCCAGATCCTTATTGGTATGATATTCAGTTTGTGATTAATGAGTCTTTTCATCAAAGTGCAATTTAGCccatactgtacatacagagAATGATGTGTGAAGACTGTAGCAAAAAGCACTGGAGCACTTCatagaaactgaaaacagtttGTAAGACTCAGTGTTAATAGTTCATCTTGTTCCcgtgcacaaaaataaaaataagtaaaccaTGGACGTTGCACTTTGGTGCAGAGATTCTGCAAAATCTGCCTCAATGAACATCATTGTCTTCTTCGTGGTAATGTGAAGTGATATCATATGAGACTCTTTTGTTCTTCTTGGAGTTTTACTTCTAGTTTATAGTGTGTATGGTTCTAAGAGCCCTGTGTGCCTGATTTGATGTAGCATGCTACAGAAGAGATGGTTTAACCTGCATAAATAGTCGAGAAAATCAGAATCTCTAGGGAAACAACGGTGATGTATTCATGATATCTGACAATCAGTTCTCTACATCGTTATTAGACTCTTCAGTGtgattgcattttcaaagtGAGCAAGACTTCTGATGTGTTTCAGGGTTTGCTTTTTGATGAGGTCACATTCGACATCCAGGAAGTGAAGTGAAGGTAAAGATTAtggcatttaattaaaaggggAATGCAACCTCAACAACTGAATTGCCAAAGAAGTCTGAAAATCAAAAGTACTTGTTAGACCTTCTAAGAAACCAACACTGCGATAGATGTAGGGTATTTAACTGAACTTTGTTGCGTAAGCCATCTAGTGGAACAAAACCGAGTTCAATAAAGGTATCAAAGTAATTCTACTCattgttgctttatttattttttaatttgttgtcagGAAAAAAGCAATGACACTTTTGCCACCAAAGGgattttctttgttgtattttacaggTATGGTTAATATTAGATGATTTACGATGCCCAGCAAAAGCCTGAAAGCCTTTGTAGAGCATAGTGGCGGCCCCTCCACACTTTCCTGCACATCTACCAAACAAATCGGAGCGtcatgtttgaaatgtttttaaatccacCATAGTTCATGTGGTTTCTTTATTTGAAGGCATAGAGCTTTGTCATCTGCTGTAACTGCTAGTTTCCattactgtgtttttgtgttgtggttttaaAACCCTGCCAGGGAAACATTCCCATTTTAgattttatacagtttatacagtaTTCGGCCAGCTTTACCAGTCCTCCATCCCCCTCTTTGGAGTTCTGAAAACCTGCATTTAATGACGTTGTCTACTCACACATGACCTCGGTTTCCTTCAGCGCTGCTTTAGGAATGTAATCCATACCTTTCCAGTTGAGCTGTTGAAGTTATGGATTCGTGTACAGATCTTGGCCAGGGATGGTTTGTATCCTATTTCCATGTGCTTGACTTTGCATTAAAAGCTTTCAGACTCTTGTATTGCTGAGGGTGTGTGGAGATTAACAAGTCTTCACTGTTCttgtacaatataatatatggtGTGCTTGTGGTTCGTATTTTGGAGCTGAGTAACAATGTGCTGGCAACATTACAAGATAGTGTACAGGAATTgggtatttattattattattttttttatcattttaatacatttccctGCATTTCAGGCTATATAAGAAACTacatgtttgcctgtatagCCTGAAATatagtgtctctgtgtgtgtatataggtataataaaattaataaattatgctCCACTTACCTGGAGCCACATCTAGACACTAGCagtgtaattaattttaatgaaagggAAATGTTGACcatggattttaaatgtaaaggagattacaaatgtatgtgttgGGAGTCCGGTTTCTTCGTTTTTGAGTCAGGGTAGACAAAAAATagattcctttttattttcttccaatttGGCATTATCTGAATTAAACGGGTCAATACACAATTATTTCTATAATTTACTGGGGGTTCTGGGTTGAGTTGGTTTCTTAATTTGTCCAGCACACGAAGTGTAAATATACCTTGCCAGGTGCTAGTGGGGAGGCATGGGAACATTGTAGCTGTATTTGCACTCTGAACAAGAAACACGGTTTAATCTTAACGAGTGTCCTCTGTTAAGTGTGATTTACATATTGACTCATAGTTTCCAGCTGAGATGAAGGTCATCTGAGCTAATGCTGAACTATTCTTGTTACTGCCAAGAGTtatgaacattaaaaaagctGAACAGAAAATGCTTGTTGTCCTTCAGCACCTGCAGAAGTAACTTGCCAATTTACATAGTGACAGACGGCAACTTTCAGATCAAGGAATTTGCCACTTTATTGGTTCATCTTCAACATTAATGCCAGATAACCGGAGATATGGATTAATCATGAGTACAAATCACTACATAAACCAGTATTTCACTCTGTATAGACTTGAGATTCTTGTGTCCGTCAGTATGAATTTGTAGCCCTGACTGGCTGGCTGTTTGCATGAAGCCAGGACTCTCAGAGCAGGTGCAGTTAGATTCGGTGAGATCCGGCTGAATAATTGAGTGGAAAAGCctaaaaacaatatgaataaatcaatgttgAACAAGTATCTATTCTCTTAAATGGGTGttatttgtattcagtatttcCCTAACTTTCAGAACTTTTTCACAgtgcagttttatatttatatattttcttttttgttatgtGAATGCTTTTTTGTGATATCAATGTGTGcaataaattattttccaatttgAGTTTTGAAACTTTACTCTAGCATCTAGTACTTCATGGCTTTAAGGATGGTGGATATCAGTGTTTTTGATCTGGCCACCTGACAGACACACTAACTACTGTGGGGAGGGCCCAGATGTTGGCCACTGCCTACAGCACCGGTGAATTAAATCCTCGAACAATTTGCTAAGGTTTCAGGACCAAACCAGATCATATAGTGCAAGAAAGGGAAGTGaatgtatttgtacatttggtgtccatcaattaaaccttttatttctgaaatgagTAAATTATTTGCTAGGAAAGTAACTTTATCTCATCTCTATGCACATTCAAAGTTTGTTCCTAGATTTGCCAAAAACTAGACTGTGAGGATAAGTCTTCACAGAGCAGGTAAAagtaatgaatacaaaaatataaccgCCAAACTGgtacaaaaaagaaatctgGTTTAATATTGACTTTCATGAAAAAGTAGTACAGCTGTCAAACCTTACAGTTCATTTACAGGCATTGTGGAATTGAATGTTCAGTTAATTGACCTACAAAGCTTTTTGCaatcaaaacaacacaattgtacttctcaaagaaaaaatatattatctcctCTTCATATATTATTCTCTATGTAATATTGAATTTTTCATTGCACTAGAGATACAGTACTTCATACTGGCTGAACAGTATTTTGAGCACATTGGGGAATGTTACCTCCTGTCCCTTTTACTGTGCAGTTATGCACATCAGAGTTTATTAACAACACCCTTGACAATCGGACTCTTTGAATCTGACCCTTTTCATTTGAGTCTTTAGCCTTCAGGTTTCTCTACACTTGGCTGGAATGTCTTTtgataaatggaaaatgtcgTCACAATGCAGCCAAAGTGAGACACTAATTGCCACTGAAATTCACTAAATTTGATCCCATCTGTACAGAGGAACCTGGATATCTTTTCTCCAGCTGCCAAATTCAGTTTTTCACCTTCGAGAACTTTCAGTGTTGCCTTTGGaggaaatatttcatatttatacatGATAGTACATTGGagagaaactaaaatgtaaaataaatagttctgCATTTTGCAGAGAATCCTGGtccataaatacattcacattcCCTCAAAATCATGTAAACTCTGTTTTGATCTCGGTGGTGGTAAAGCCACCACTTTTTataccaagaaaataaaattaaaactctgtcacaaacaaaaaagtgaaattatcCACGTATTGTTTAAACTGACTGCAGAATTTCCAATGTGGCCCCTATAGCCAGTTTACACTATACAATTTGCTTCAATACAGGatcatttcccttttttgtgtttttcaatccTCTCTCCGGTGACCGTGTTATACTATAAGGTATTCTATTCTTAAACACAGGATTAATTCATTTGCTGCAAAGTACACAGACAAGTTTCTGTTTAACCCTTTCAAAGgtcaacattcattttaaatcatgaacGCAAAATGTGCCCAGTGCAATTTGTAAAGCATCACAAGTACCAAGATGGTCAAGCAGTTCACTTTTCAGGAAAGGCACAACTAAATGTATGAGGAGCAGGGGAAGAAATGACACCCACATTTAAAAGACACCTCTTAAAATGTCTCAGTTTCCTGCAGGcaattaaatagtttttgtcCCTCGctcaacaccaccaccaactcGTCCAAAGTAGCAATTCAAAGTGTTTTAGCAGGTGTCTGTAAATTGTATGAAACATCTTGACTTCATTTCGGTCTCCTCTTCCTGAGCAGTTTCCTAATCTATACCTTGGACAGATTAGTTCCTCAAACCCTTAACCATAaagcaatagttatttttatttagaatcAAAACTAGCTGGGTTTCAGTTGTTATTGACCATCTGGCAGAATGTTTCAGTAAACATTACAGCtgagcttgttttttttgttgttttcttttagtcAATCAACCATTTGTTCCTCTGATATTCGCTGTAAATAAGGAGGACTTTTCTTCTCCCCGATGAGGACTTAACTAAAAACGGGAACACAAGCATTCAAAATTGCAGGTCTGTTAATGAAACACACTGTGCGCCAAGGGAGCAGTGGGAGTGAATGTGAAAATGCAACGCCATTCAGATCAGTCTCTGACATATGTTCTGAACACTTCGAGACTGAGATGGACAGAAAGTGTAGATATGATCCTTAGGCTAGTCTGGCAagaagaatgttttttgttgttggttgatttttcccatttttaatgaaaaaataaatgttacacaaaataacaccattgttttttaattaggaaTCAATCGAAGTTCGTCTTCTGTAAGTGCCTGTTGGGAATCTCGATAGCGCTGACCTGCAAAGGCCAGGAGCCACCCATGATCCCTGCCTGGATGGCCACGCCAGTCACCACCGCCAGATCCGGGTCCACGGAGGTGTTTGGGTCCTTCCCGAAATACTCGCTGATGATCTGGCGAATGCGGGGGATCCTCGTTGATCCGCCAACCAACACGATCTCGTCCACCTCCGCCTTGGCCAGCTGGCCCTCCCTCAGCACCTCCTCGATTGGAATGAGGATTTTCTGGAAGAGGTCGGCGTTCAGCTCCTCGAACAGCTCTCTGGTGATCACCTCCTGGAACTGCACGCCCTGGGGCTCCCCCTGGGGCCCCCGCGGCTCCAGGCTCAGGGCAGTGCTGAACAAGTAGCTGGGCTGGAGGGTCAGATTGAGCTTGGCCTGCTCCACGGCCTGCCGCAGACGGTGGATGTCTTCCTTGCGCGAGGGAAGGACCCCGTACTGCTGTTGGACTCGCTCCAATATGTGCTGCAGAAGCCGCTGGTTGAAGTCCTGGCCCCCCAGCTTATTATTCCCTGAGCCATGGCCCTGGTTAGAAACATGCCTCCCCGTTTGTTCAATAAGGAGACATCCAAGGTTCCTCCCCCCAGGTCGACCACCAGCACATTGAAGACGTCCGCCTTGTGCAGCCCATAGGCCATAGCTGCTGCCGTCGGCTCATTGATCACCCGCAGGATGTCCAGACCTGCCAGATTGGCTGCCCTGATTGTGTAGTTTCTTTGTCTCTCGTCGAACTCCGCCGGCACAGAGATGACGGCCTTGGAGATAGGCACTCCCAGGTGCCTCTCTGCCATCTTCCTCATTTTCAGGAGGAGGCGGGAGCCAATGAACTCCGGGCTGACAGTGAACGTCCGATTGGTCGTTATTGAAAACTCTGCACTCCCGTTGTCATATACAACCTTAAACTGGTATCTGGCACTTTCCTGAGCCAACTCTTCGGGTTTAAAAAGCTTCCCTATGAATCTTTTGGCATCGTAGATGGTGTTGTAAGGATTGGCGTCGGCCAGTTCCTGTCCATCATAGCCCACGTTGATGTCAGAGGCAGTGAAGGACACCACACTTGGGAGGCTCTTCCTCCCGTCCTCATCACCAATCACCTCCACATCCCCCACGCCGGGATGGAAGACCCCCACAGAGCAGAAGGTGGTGCCCAGGTCCAGACCGATGACTTTGGGCTTAGGGTGAGGCAAGTACTGTTGACCCAAATAACCAGCCAGCAAAAGAGCTAGGACAGCCGAGCCTAGTATGGACATTTCCCCGGCCATCCTCTCCAATACACTTCTGAATATCCAAACCCGTTTAAGAAAAGCCCCTACACTTGCGTTACCGGGTTGATTTCTAAAGCGATGACTGTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15068 lncRNA upstream 57666 12978278 ~ 12979516 (+) True G12209
TU15039 lncRNA upstream 133608 12903352 ~ 12903574 (+) True G12183
TU14906 lncRNA upstream 576899 12435136 ~ 12460283 (+) False AMCG00016213
TU14866 lncRNA upstream 662073 12374748 ~ 12375109 (+) True G12043
TU14865 lncRNA upstream 681813 12354675 ~ 12355369 (+) True G12042
TU15087 lncRNA downstream 1711 13065219 ~ 13065938 (+) True G12217
TU15090 lncRNA downstream 8063 13071571 ~ 13073752 (+) True G12220
TU15077 lncRNA downstream 34478 13097986 ~ 13100583 (+) False G12214
TU15078 lncRNA downstream 34478 13097986 ~ 13100583 (+) False G12214
TU15144 lncRNA downstream 208076 13271584 ~ 13377103 (+) True AMCG00016241
AMCG00016237 mRNA upstream 15981 13020983 ~ 13021201 (+) True AMCG00016237
AMCG00016230 mRNA upstream 63635 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016229 mRNA upstream 146411 12885626 ~ 12890771 (+) True AMCG00016229
AMCG00016221 mRNA upstream 250283 12778353 ~ 12786899 (+) True AMCG00016221
AMCG00016220 mRNA upstream 345383 12682272 ~ 12691799 (+) True AMCG00016220
AMCG00016240 mRNA downstream 121526 13185034 ~ 13188393 (+) True AMCG00016240
AMCG00016239 mRNA downstream 148550 13212058 ~ 13247016 (+) True AMCG00016239
AMCG00016241 mRNA downstream 324454 13387962 ~ 13389617 (+) False AMCG00016241
AMCG00016242 mRNA downstream 381530 13445038 ~ 13455916 (+) True AMCG00016242
AMCG00016249 mRNA downstream 519536 13583044 ~ 13588973 (+) True AMCG00016249
TU14996 other upstream 255318 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1165447 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3438026 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3445533 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3810937 9223412 ~ 9226245 (+) True G11545
TU15233 other downstream 558371 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 567777 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 571934 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1374263 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 3420847 16484355 ~ 16486003 (+) True AMCG00016329

Expression Profile