RNA id: AMCG00016238


Basic Information

Item Value
RNA id AMCG00016238
length 1590
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00016238
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13065216 ~ 13071642 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGATCGAGCAGTTTTGGAAGATTTGATGCTTTCAGACACCATTCAACTTCGCCGAAGCCAGATGAACATGCAGAGACAAACCCGGCAGAAGGGGAGGCAGGAGCAGAGAGCTGCGACCACAACCATGCCAAAACTGGCAGTCTGGGAAAGAAGATGAGGGCCATTTCACTAACCATGCGCAAaaagatggggaaaaaatacatcaaagccCTTTCAGAGGAAATGATTGAAGATGCAGATAGAGACCATGAAGGTGAAACTCAGGGGGGCCGACCTTTAGAAAAAAGTGTCTTGAAAAACAGTGAATCTACAGAAAGCCTCTACAGTCTCAACAGTGGCCAGAGCTCCTCCAGTGGGATCACCAGCGGGTCAGATGGTTCCAGTAACAGAGACAGCCTGAGACTGGAGGAAGAGATCCCATACACTGGACCTTTCTGTGGCAGAGCCAGGGTTCACACAGACTTTATCCCGAGCCCCTATGACACAGACTCACTCAAACTAAAGATTGGAGATGTGATTGACATAATCAGCAAACCACCCATGGGAATATGGACTGGCATGCTTAACAGCAAAATTGGAAACTTCAAATTCATCTATGTTGACATTCTGATGGAGAAGGAGGTGGAGACCCGCAAGATCAGACCTCGCAGGAGAAGCAAGCGCCCCCGACCCAAAaccctgcaggagctgttggagcGCATTCATTTAGAGGAATACACCTCCTCGCTGCTCCTCAATGGCTATCAGAATGTGGAAGACCTCAAAGATTTAAAGGAAAATCACCTGATTGAACTGAATGTAACCGACCCAGAGCACAGGGCCCGGCTGCTGGCCGCAACAGAGTTCCTGCTGGACTTGGAAAATGAAAATGACCCGGAGAGTGGGATTCTCCAGGAACCTCGGTCCCCATCCGATAACCTGAAGGTGGATCAGGAACCCCTTAACGAATGTCCCAGAGACTCAGGGTGTTACATAACAACAGAGTGCCCAGACACCAGCAAAGACGACACGGAAGATGAAAGCCAGACAGACCTTGCAATTAACGTCCCTGCCCAGACCTAACTACTGCACTTTATTTCCATCACTTTATATAGTTGTACTGAGTTAAGACTGTAAATATTCTTGGATCaactataatacaaatatgtgctTCCCCCCCTTTTCATCTAAAAGCGCTGCATCTACACTATCTTTACTTGTCTAagtgatcattttatttatttccattctgtATGCTGTAGGTGGCCACCCTTCTCCTTGCTTGCGAAGCTCTGATGCAAGGTAGATGCAAGGTACACGGTAGTGGGGCCAGAAAACTAGCAGCGTCGAGAACTCTTTTGGTATCTGCTGCTATCAGTTTTAACACAAGACAGTTGTAAAAAAAAGTCTTGACATTCCCAAAgttatattgtaaatatgtgAGTGTAATAGAAATTGTATGATGTAAAAGATAGAGAAGTCCTTTGTGAATTGAAATGATTATTTATGTTGATGTACCTACAATATATCCTTATTTACACTATTCTATTTTTACCATTCCGTGGATTAttgttgaaatgaaataaaggttttctttttttaaagatacaa

Function

GO: NA

KEGG:

id description
K23707 SAMSN1; SAM domain-containing protein SAMSN-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14937 lncRNA downstream 426518 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 673808 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 709852 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 711835 12353160 ~ 12353381 (-) True G12041
TU14816 lncRNA downstream 826202 12238785 ~ 12239014 (-) True G11996
TU15107 lncRNA upstream 26349 13097991 ~ 13100224 (-) True G12235
TU15219 lncRNA upstream 471706 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 555613 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 566661 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 566661 13638303 ~ 13639590 (-) False G12358
AMCG00016234 mRNA downstream 2451 13060741 ~ 13062765 (-) True AMCG00016234
AMCG00016233 mRNA downstream 81920 12978276 ~ 12983296 (-) True AMCG00016233
AMCG00016235 mRNA downstream 115636 12940122 ~ 12949580 (-) True AMCG00016235
AMCG00016232 mRNA downstream 132919 12906907 ~ 12932297 (-) True AMCG00016232
AMCG00016236 mRNA downstream 166906 12890978 ~ 12898310 (-) True AMCG00016236
AMCG00016243 mRNA upstream 395716 13467358 ~ 13477045 (-) True AMCG00016243
AMCG00016248 mRNA upstream 412695 13484337 ~ 13494574 (-) True AMCG00016248
AMCG00016244 mRNA upstream 450532 13522174 ~ 13534975 (-) True AMCG00016244
AMCG00016247 mRNA upstream 464052 13535694 ~ 13542635 (-) True AMCG00016247
AMCG00016246 mRNA upstream 473497 13545139 ~ 13558811 (-) True AMCG00016246
TU15028 other downstream 194656 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 194656 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 202346 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 736183 12323161 ~ 12329033 (-) True AMCG00016211
TU14519 other downstream 2217405 10846931 ~ 10847811 (-) False AMCG00016176
TU15220 other upstream 482943 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 1718561 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3786899 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3786899 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3786899 16858541 ~ 16861179 (-) False G12945

Expression Profile