RNA id: AMCG00016240


Basic Information

Item Value
RNA id AMCG00016240
length 3360
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00016240
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13185034 ~ 13188393 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCAGGATTCTGCGGTTTTAACTTATCTGGAAGGTTTACTAATGCATCAGGTGGCGGGCGGACAAGGTGCCACGGCTACAAGGAGATCTGAAGCTGGGCACGGCGACCGGGAGCAGAGCAACAAGCCGGTCGCCAGCTATCAGTTGCCGAACCATGGTCCTAATCAGGAAGACCGGAGCGTTCCTCTTGGGGGATCCACACAGCACCTTAAAAAAGCCCGGCTGCTCCGCTCCTCTGAGGCCTGGACTGAGCCCGAGAGCCGGCGAATGTCCGCCCCCGTAGGGGATTTAAATGGGCAGAGCAGGGAGCTGCTCACAGGAGCTCTGGATGGATCCCCTAAATGCAAAGGAGAAAGCACTCTGCTGGCATCCCTGCTGCAGTCTTTCAGCTCCCGGCTGCAGAGCGTGGCGCTCTCACAGCAGATCATGCAGAACCTGAAGCAGCAAGACTACCCCCAAAGCGACGAGAGCACTCCAGAGGAAGACGAGGCCCTGAGATGTTTTGGAAGTGCGTCCAGTCGCTTAAAGGGCCTGTTGAAGAAGAATAAAATGCAGAACCACAACAGTGTGCCTTACCGCCGGAGAAGCAGCCAGGAGAGGTCCTCCGATTCCCCCCAGGCGTCACAGGGCAGCGCTCAGCCTGCCTCTGGGGATGCTCTGTCCTGCGCCGCCAGACTCAAAGCTGTAGCCAGCATGGTGAAGCACAGATCCAGCCCTGCTTCTTCCCCAAAACCCAGTGTTGCCTGTAGTCAGCTGGCCTTACTGCTCTCCAGTGAAGCTCATCTGCAGCAGTATTCCCGGGAGCAGGCCTTGAAAGCACAATTATCTGGGCGATCTGCCAGTGAGAGACTTGCAGCAATGGCCACACAGCAAACACTGGATAATAAGCAGGCCAACGTGGGCCAGCATCAGCTGTCCTCAGATATGGGAAGCCCTTTAAATGAACAGAATGGCACACTCCCTCGGACCACTGTCGACTCCAGTAAATGCAGTCCTGGGCCCATTCTGGGACCGAGCAGATCCACTAGTTCCCCCCGCGCTCTTCATCCTTTCAGGGAAAAACGCTCCTTCGAGAAACCAAACCCAAGACCCTCCCCAAACTGCAGCAGCTTGCTTTTGCACCTTTTGAATAACCACAACACGCAGCGGCAGACCAACGGGCACAGCCACCAGGAGGAAGATTACAGCGTCTTCCCAAACCACAGCTCACCGCTGCCATCCGACAGCGAATACTCCAACCACGAGAACAGCTTCACAAAAGACATTAGTGATGCAGagagctccagctccagctgctCCCCCATAGACCTTTCCGTGAAGAGCAGGGCCAGCGGTCCCATGTTGGGTTCCTCATCATCTCTGGACAAACTTACGGAGTCTCTGATTAGTAACTGGAACCCTGAGACACCCCTGCATAAAATCACAGAGAACAGAGAACTGAAAAACAGTTCGGTTATCAAACCCCATCACAAAGTCACCCTTCTGCAATTGCTGTTGGATCACAAAAACAACGAGAAGGTCAATAAAAGTGCAGGCAGTCCCGATGCACAGAGAGACGTGAGCCCTAAACCCAGTGCGGCTACTGGCCGGAACACGCCTATCAGTAGCTTGGAAGACAGAAGTACGAGAAACTCTCCCGATGTGATGTGTTTCCGGAAATTGCAGCCCTTGCCTACAATCTCACAGGGGCGAGACTCGAACGGCAGTGCATCGCCGTACAGCTTGAACCTGTCGCCTCAGGTGCAGGCGACTCCCTTAGACCTGTGTAAGACTAAATCCCACTCCGGTGAAAGTGCCCAAGAGTCCTCCTTTAGTGCCagtaaattattacaaaatttAGCACAATGTGGATTACAAAAATCAGTCCCATCACCTCCTGCAGAGACTCTCGCGCCTCCTGGTAAAAGGCAGGCATACGAATTAAAAACTGATAAACCTGTGGCATTGCTCGAAAGACTCAATGCCCCTCTACCAAGGAAAACACACCCTGTTCTCGAAGAGCCCCATGTGAGCGGGGTCAAGTCTCCATTTGTGGTGGAACCTACATCCCCCTCCGTATCGGAGATCGAGAACCTGCTCGAGAAACGCACCGTCCTTCAGCTGCTATTGggaaccaccaccaccaccaaggAAAAAGCAGGGAATAAGCGGAAGAGACCAGCAGCCAAAGGAAATGCTCTGGAAAAACAGTCCAACCAATCCTTGAGCCACGGGAGCTCAAACGATACAATGCTGGATGTCCAGATAAAGACTGAGCCGACGCAGGAGGTCCATGTGTCTGAGCATGATGGAAATGCTGAAGGAGGCCAAAGAGAGGAACAGAGGGAGGGAAACGGCCCTCTTCCTGTAGCCtacaaacacattaaatcaGAGCCCTTCTCTTCAGAAGCCATTCCTAAAGATGGCCTGCTGAGCCAGCTGTTAAAACACCAGCCCGGTACATATCAAATGCATAAAAGCCCAGATGTAAATATGAGCAATGTGAAAGAAGGGTCATCTCTGCATCAAGGACCAGCAATCCCCAAAAAGAGGAAGATCTGTAAGGAACTGACTGAACGCTTGAGCTGTGATGTCCGACCAGGCAGCAGTGCAGCCCACAGGGAGGCAAGTGCTGAGCGCTGTGCCTCTGGCCCGTCTGAAGGACGCAGTTTCAGCAGTCCGGTGAACCGGCTGGAGGCCGACGCCCTCGGGCCTGTGGGATATTCTGTGAGCAGTTCTCCCCCAAAAGACAATAAAGGCTTCAATGTGCTGAAGCAGCTCCTACTTTCGGACAACTGTTTAAAAGATCTGTCGCAGCCACGAATAGGCGCCAACCCCGCTGTTCTTCAGGCTAAGATCAATGGGAACAGCCCCAATCTGCCCAGTTACAATCATGAACTCGCCACCTTGCAGCGCAACTCCAGTCCACAGGGGCTGGGGCCTCTCGACCTCAAGGGCTTCAACGCTGCCCAGGAGCGGAGCAACCCTCCCATTTCTCCGTGGGGTTACAGCACCGCTAGACAGGACTCTCCGAAACTCAACCTCGTCCCTGTCAAGCGAGAAGTGGAGGGCCCCATTCAGTGGGTTATCAGTGGGGAAGACAAGCATGACTTAAACCGCGATTCTCCCAGGCTGACCAAGTCCAACCCCATATTGTACTATATGCTGCAGAAAGGGAACTCCCATATCAACCGAGAGGGCAAAGAGAAAAGGGTCGAGCCGCTGCAGTGTGGGATGCAAGTGAAAATTAAAGAGGAGCCCGTGTCTGACTTGGATGCTTACACCCACAGACTGAACTTGAAACATCACTTGCAGCTCCACGAGGAGAAGCGAGGGAGTGACACTGATGGGCTCAATGGGACAGTAGAAAAGTGCTAA

Function

GO: NA

KEGG:

id description
K17965 NRIP1; nuclear receptor-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15082 lncRNA upstream 84451 13042242 ~ 13100583 (+) True G12214
TU15077 lncRNA upstream 84451 13097986 ~ 13100583 (+) False G12214
TU15078 lncRNA upstream 84451 13097986 ~ 13100583 (+) False G12214
TU15090 lncRNA upstream 111282 13071571 ~ 13073752 (+) True G12220
TU15087 lncRNA upstream 119096 13065219 ~ 13065938 (+) True G12217
TU15144 lncRNA downstream 83191 13271584 ~ 13377103 (+) True AMCG00016241
TU15146 lncRNA downstream 163815 13352208 ~ 13389636 (+) False AMCG00016241
TU15170 lncRNA downstream 285095 13473488 ~ 13473785 (+) True G12289
TU15214 lncRNA downstream 358006 13546399 ~ 13546598 (+) True G12330
TU15215 lncRNA downstream 363201 13551594 ~ 13551858 (+) True G12331
AMCG00016231 mRNA upstream 121526 13037182 ~ 13063508 (+) True AMCG00016231
AMCG00016237 mRNA upstream 163833 13020983 ~ 13021201 (+) True AMCG00016237
AMCG00016230 mRNA upstream 211487 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016229 mRNA upstream 294263 12885626 ~ 12890771 (+) True AMCG00016229
AMCG00016221 mRNA upstream 398135 12778353 ~ 12786899 (+) True AMCG00016221
AMCG00016239 mRNA downstream 23665 13212058 ~ 13247016 (+) True AMCG00016239
AMCG00016241 mRNA downstream 199569 13387962 ~ 13389617 (+) False AMCG00016241
AMCG00016242 mRNA downstream 256645 13445038 ~ 13455916 (+) True AMCG00016242
AMCG00016249 mRNA downstream 394651 13583044 ~ 13588973 (+) True AMCG00016249
AMCG00016250 mRNA downstream 409441 13597834 ~ 13617644 (+) True AMCG00016250
TU14996 other upstream 403170 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1313299 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3585878 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3593385 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3958789 9223412 ~ 9226245 (+) True G11545
TU15233 other downstream 433486 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 442892 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 447049 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1249378 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 3295962 16484355 ~ 16486003 (+) True AMCG00016329

Expression Profile