RNA id: AMCG00016241



Basic Information


Item Value
RNA id AMCG00016241
length 511
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00016241
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13271584 ~ 13389636 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCATGAAGATGTCAGTTTCATCTCATTCTCTGAACATGGGTGCGGACGTGTGCTTCTTCCTCACAGCAGTTCAGAAAACCGCTGACCAGGCCAGTAACTCCGGCCCTTTCAGAAGAAAGAGAGGTGAGATCGTCATGGAGAGAGCGTGGCTTGTGGCCAGGTGGAGTATTTATACGTCTGGAGAGGTCAGTTTACAGTGATCGATCAGGTTGGCTATAGCAGATTCACAcccacttttttgttgtttgtttgtttctttgctctATTAAAATGGGTTGTATAGTTTATTGAAGTATTTCCCTGGTACAtagaatgcatttcaatttcctGTAGAAGTCACAGTGAACCTGCTGATGATTGTAAAAAGAGGTTGACACACAAAAACCTTATAGGGCTTTCCCTTAGCTCAGTCAGGGGGGGGGTTAAAATGTCCATCAACCtgatttatgattattttgcatgctattgtaatgtattctgatttttttttttcaaagaataaACTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15144 lncRNA upstream 10859 13271584 ~ 13377103 (+) True AMCG00016241
TU15082 lncRNA upstream 287379 13042242 ~ 13100583 (+) True G12214
TU15170 lncRNA downstream 83871 13473488 ~ 13473785 (+) True G12289
TU15214 lncRNA downstream 156782 13546399 ~ 13546598 (+) True G12330
TU15215 lncRNA downstream 161977 13551594 ~ 13551858 (+) True G12331
TU15231 lncRNA downstream 248685 13638302 ~ 13639588 (+) False G12347
TU15232 lncRNA downstream 248685 13638302 ~ 13639150 (+) True G12347
AMCG00016239 mRNA upstream 140946 13212058 ~ 13247016 (+) True AMCG00016239
AMCG00016240 mRNA upstream 199569 13185034 ~ 13188393 (+) True AMCG00016240
AMCG00016231 mRNA upstream 324454 13037182 ~ 13063508 (+) True AMCG00016231
AMCG00016237 mRNA upstream 366761 13020983 ~ 13021201 (+) True AMCG00016237
AMCG00016230 mRNA upstream 414415 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016242 mRNA downstream 55421 13445038 ~ 13455916 (+) True AMCG00016242
AMCG00016249 mRNA downstream 193427 13583044 ~ 13588973 (+) True AMCG00016249
AMCG00016250 mRNA downstream 208217 13597834 ~ 13617644 (+) True AMCG00016250
AMCG00016256 mRNA downstream 287377 13676994 ~ 13705883 (+) True AMCG00016256
AMCG00016255 mRNA downstream 317597 13707214 ~ 13714691 (+) True AMCG00016255
TU14996 other upstream 606098 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1516227 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3788806 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3796313 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 4161717 9223412 ~ 9226245 (+) True G11545
TU15233 other downstream 232262 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 241668 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 245825 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1048154 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 3094738 16484355 ~ 16486003 (+) True AMCG00016329

Expression Profile