RNA id: AMCG00016244


Basic Information

Item Value
RNA id AMCG00016244
length 3887
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00016244
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13522174 ~ 13534975 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGGTAGGGGAGGGCAGGAGACTGAGCTAGGCAGACAGCAGGGAATCGAGGAAGAGTGAagtacaggagagagagagagagagagaacgaacAGGAGTGAGAGCGAGAAAGAGGAAGGTGATCATTTTGGAGTTACACAAGCCGTTTCAGGACATGGAGAGCCCAGAGAGCTCCTCCGGGGTCATGGGTCTGCTGAAGACCTTTGATTCCTCTGAGTTTGGGAGCTGGGAAAAGATCGGCTCTGGAGGATTTGGTCAAGTTTACAAAGTACGCCATGTACAGTGGCAAACATGGCTGGCAATCAAGTGCCCTCCTAGTCTTCACGTTGATGAAAAGGAGCGCTCAGAGCTGCTGGAGGAGGCCAAGAAGATGGAGGTGGCCAAGTTCAGGTACATCCTACCTGTGTACGGGATCTGCAGCGACCCTGTCGGGCTGGTGATGGAGTACATGGAGACGGGCTCCCTGGAGACCCTGCTGGCCTCCGAGCCGCTGCCCTGGGAACTGCGCTTCCGCATCATCCATGAGACAGCAGTGGGCATGAACTTCCTGCACTGCATGAACCCCCCGCTCCTGCACCTGGACCTCAAGCCCGCCAACATCCTGCTGGACGCCCACTACCACGTCAAGATCTCCGATTTTGGCCTGGCGAGGTGGAACGGTTTCTCGCGGGCCGATGACATCAGCAGAGATGGCTTCTGTGGGACAATCGCCTACCTCCCCCCTGAGAGGATCATGGAGAAGGACAGGGTGTCGGACACCAAGCACGATGTATACAGctTTTCAATTGTCATCTGGGGGATTCTGACGCAAAAGAAGCCATATGCAGAGGAAAACAACATTCTGCACATCATGGTGAAGGTGGTGAAGGGGATGCGGCCAGAGCTGCAGTCAATCCCACGCTCCCGCCCACAGCCCTGCGCAGGATTCATCTCCCTAATGCAGAGGTGCTGGCAGGAGTCCGCTAAAGACAGGCCCAGCTTCCAAGaaattacATCAGAGGCCGAGGAACTGTGCTCAAAGCCCCAGGAGGAGGCCAAGGACTTAGCTGTAGAACCAGAAGCCAGTCAATGTGATGGGCAGGGCTACACCAATCAGGAGAAAGCCACGGAGAAGAAACGGCCACAGTCCACAGCCCTGACAGAGAAGGACTACAGCCTGTCAGAGCTGCTGAGTCAGATCGACTCGGGCATTTCCCAAAGCTTTGACCGGGTCAAAGAGGACAGCACCCACTCCAAGGAGAACACCAACAAGAGGCTGTCTGGCATCTCCTCCGTCGACTCAGCGTTCTCCTCCCAAGGGTCCATCTCCCTGTCCTTTGAAAAGGAAAACGCAGCCTGTGATTCTGGGACACTGGATGTGCAGAAGAAGAAGCTATGTGAGGCTATCAAGACAGAAGACATCGCCAAGTTGATGAAGATCTTGCAGCCCCAGGATGTGGATCTGGTGCTGGAGGGGGGCTCCAGTCTCCTGCACTATGCCGTGCAGCTCTCCAACGATGAGGCCGTCAAGTTCCTGCTGCTCAACAATGCCAACCCCAACCTGGCCAACAAGAGGGGCTCCACACCGCTGCACCTGGCTGTGGAGAAGAAGCTGAAGAACATTGCCGAGCTGCTGCTGGGCCGCAAGACCAACGTCAACGCGAAGGATGAGGACCAGTACACCCCACTGCACTTTGCTGCGCAGAACGGGGACGAGACCATCGCCCGGCAACTGCTGGACAAGAACGCCTCCATTAACGAGGTGGACTTTGAGGGCCGCACTCCCTCCCACATCGCCTGCCAGCACGGCCAGGAGAACGTGGTGCGGGTGCTGCTGAGTCGGGGTGCGGACATGCATGTCAGGGGGAAGGACAATTGGACACCCCTGCACTTCGCTGCCTGGCAGGGCCACCTGTCCATCGTCAAGCTGCTGGTGAAACAGGGCACCAACATCAACAGCCAGACTTCGGACGGCAGGACCCCGCTGCACCTTGCGTCGCAGAGAGGGCAGTACCGGGTGGCACGTATCCTCATCGAACTGGGAGCCAACATCCACGTCACCTCCGTCATGCTGTACACGCCACTGCACGTGGCAGCTGAGACGGGACACACCAGCACCTCCAGGCTTCTCATCAAGCACAAGGCCAACATCGAGGCCAAGACCATGACTGGCTCGACTGCCCTCCACTTGGCGGCATTGTTTGGACACCTGCCCACTGTTAAAATGCTGATCGAGGAGAAAGCCAGCCTGTGCAGCTCAGACCATGCCCAGCACTCCCCCTGCCACCTGGCTGCAGAGAAAGGGCATTGCGATGTGGTGAAGGAACTCCTCCTTAGTTGTCCAGAGAGTATCAACCTGGCCGACAGTCAGGGCTTCACCCCACTGCACCTGGCTGCCAGAGAGGGCCACGTACAGGTTGTCAGCACCCTGCTGTCCCACGGGGCCGAGGTCAACTGCCACAACGTCATGTCGCAGACTGCACTGCAGCTGGCAGAAGAGAACGGCAAAACAGCAGTCATTAAGCTGCTGCAGAGAAAGGTTGTGATCCTGAAACTCACAGAACTCAAGGACAGTGACTCTGTAGATGGCAGCATCGCTCAAAGTGAGCCGATCAGCGCTTAAGGACTCTCCACTGAGAGAGCGTCACGGTGGATTGTACAAAGCTGTGTCGGAGTTCTGAGCAAGGAAGAGCAGTACCTAACCCACCCAGCTGTTGGGAGTCATTGTTGTATTGTGTACATATTGCAAATCCTGTCTTAATGGCACTCTGAACTTGCAAAACCAAATCTAATATCTCTCTGGGTGCAGCTGGGAAATGGCTTTGGACTTCTGTGAGACTGCCAAACTTCCTTAAATGAGTAGCAGTTTTGTAAGTAATAAACCCAACGTATATAGAGATACGATGGCAGAATTGTACTACCCCatgttaatgtatatatatacatatatatatatattttaatattttttttatactttttattgcacacagtTGGGATGTAAATATCCCCATGTAGATATCAATCCATTGCTAAGTTTGCCTTCAAGTTATTAACACTCCAAGGTGCTTGCTTGACTACAGTAAATGAAACTCGTTTGACATGCTTGGCACGGCTTCCATTACAACTCCACGCCTCACTCCTTGTGTAATGACAAGTGCAAAGGTCCCTGTTgtctttcacagtcactgtgGCTGCCGTCAGAGTGCAGGTGATTAGGATTTTAGACAGTGCTAAAATTGTACTTTCTTACAAAAAGAGCCGCAACTCATAGCTTGGCATTCAGAAAGACGTTAAGTCTTCTTAAACAGCGCCTTGCATTTTTGTCTGTCATCGCATCTCCGGTATTTCACTGTACTGCCCTTTAACGCCAAGCAGACTGATGATGATCTGTCTCTGCAGTGAAAATATGCAGCCGTTCAGTGCCAGGATGCCACACACAGGGACCATGGGAAGAAACCTGCACGGGGAAACTAGACACTTGAAGCAGTTCACTAATTGCTCTGCCTGCTTTGCCTCTTCTTCTCCCTGGGAAACATGGTTATATCTCCCATTCCTCGGAGGTGGGAGCTCCGTGCTTACTGCCTCCACAGATACTGAGGAAATGTCAGGAAGTGGAGAATTGCTGGGTGGATGGCTCACATGTTACATTTACTGAACAGCCACAGATACATGGTTGTGCCATTTTTCACCTTCTCAAGCCCGCACACACAAGCCCAACTGGAAGCAGatattttgcacattgtttaATCTGCTCAGGGGTCCCTGTTGCCTTTTTCATTGTAATATAGTGTTGATATTATTCAATTGTATGCAATGCGTTGttggatttatgtatttgttcaagTGTTTGCACAGCCTCACTTTTGTAAATAATGGTACAGTAAAGTGCATCTCATTTACTGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08848 RIPK4; receptor-interacting serine/threonine-protein kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15107 lncRNA downstream 421950 13097991 ~ 13100224 (-) True G12235
TU14937 lncRNA downstream 883476 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 1130766 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 1166810 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 1168793 12353160 ~ 12353381 (-) True G12041
TU15219 lncRNA upstream 8373 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 92280 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 103328 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 103328 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA upstream 103722 13638697 ~ 13639590 (-) True G12358
AMCG00016248 mRNA downstream 27600 13484337 ~ 13494574 (-) True AMCG00016248
AMCG00016243 mRNA downstream 45129 13467358 ~ 13477045 (-) True AMCG00016243
AMCG00016238 mRNA downstream 450532 13065216 ~ 13071642 (-) True AMCG00016238
AMCG00016234 mRNA downstream 459409 13060741 ~ 13062765 (-) True AMCG00016234
AMCG00016233 mRNA downstream 538878 12978276 ~ 12983296 (-) True AMCG00016233
AMCG00016247 mRNA upstream 719 13535694 ~ 13542635 (-) True AMCG00016247
AMCG00016246 mRNA upstream 10164 13545139 ~ 13558811 (-) True AMCG00016246
AMCG00016245 mRNA upstream 27196 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016251 mRNA upstream 49932 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016252 mRNA upstream 120063 13655038 ~ 13675532 (-) True AMCG00016252
TU15028 other downstream 651614 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 651614 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 659304 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1193141 12323161 ~ 12329033 (-) True AMCG00016211
TU14519 other downstream 2674363 10846931 ~ 10847811 (-) False AMCG00016176
TU15220 other upstream 19610 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 1255228 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3323566 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3323566 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3323566 16858541 ~ 16861179 (-) False G12945

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005391 True 3589 mRNA 0.50 8 NC_007121.7 35116172 ~ 35149513 (-)