RNA id: AMCG00016245


Basic Information

Item Value
RNA id AMCG00016245
length 5992
RNA type mRNA
GC content 0.47
exon number 14
gene id AMCG00016245
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13562171 ~ 13582666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCGCTGCATGCCGGGAGGGACAGGCTGTGCTGGCCGCCCTGCCGCACTCAGCGCATTCAAAGGCAGCTGTCGAGGCGCAGCGCAGCACCAGCGGGTCACAAGAGTCTCCGTTCATGGGCTGCACCGGGGCTCGCTGAGGCCGGTCTCGCCGCCCTGTAACTCCGGCTGAACTTGTTGTCGGTGTGAAGGGAGTATAGCGCTGAACCATGCACAGCGACCCGGGCGACGGCAGCAACTTTGCCGGGTAGCCTGTGGTAGTTACGGCACGGTAGCGGCGCTGGCAGGTTTGCTGGGTCAGCAGGCCTGAGTGCCGCGGATGAGGCTGTGGGATCCGCACTGTTTACGCGGCTCACTGGCACacagtcctcctcctcctcctcctcctcctccgctgCTCGGTAACACATTGCAACTTACACGTCAGTCTCCGCACCCGAGCAGAGTTCACGTCTCCGGCCATTAAACGGGTTTAGAAGTCGAGTTGTTGGCGAGTTTTATTCGTGAAGAAGACCGAAGTGAAGAGTCGGGATGCCGCTTCCTCTCCCGTCTTTCCGTGCCTGAAGGGACCCCGGTGTTTTAACGTTTTAAAAAGGAAGCTTCCATATTATGTTTAAAGATGTCTGTCCTGGAAAGTGTCCTGGCAGACTTCGCCCCGGGGGAGCTGCAGTGGCTGGGCTTGGTCACGCTGTTCGTCGCCTCCGTGGTGACGGTGCTGGTGTATCTGGTTCAGTGGGCGCTGGGACCGGGCGGCCGGGCGGCTGATCGGGCGGAACCGGGCGCCTTCTCGGCCGAGGCGGACGCGCTGCTGAGCTGGGCGCTGGCGCTGAGGAGCTGGAGGTGTGAGTGGCAGAGTGCCTGGTGCAGAGCCCTGAACGACCAGGCGAGACGGACCGGGGGTCCTTTGCACTTTACATTTCAAGAAGATGGACTCCAGCCGTCCAAGCTGGCTGTCAGCCAGGTTTCCAGTTATACAAAATCAGCTGAACATAAGAATGTGTGCTGCCAGGTGTCTGGAGACAGTCTGCAGTTTTCCCTCCGTGTCACCCAGAGGACAGCAGCACCCACAGACCGGCAGAGTTTCACTGTAACAATCTCTCCTCTCCAGATGCAGTGTGAAGCAGTGGCCTGGCCACAGGATGCGCTGTTTGTGACGGTGTGCGTGTTCTTGTTCTTGCCTCTGCAGCTGGAGCTCCAGATGAAGGAAGCGGTGGGGAAGCAGGCACCGGGGCTTCCAAGTGTCGCCGCTGTCCGGAGCCGCGTGCAGGAGATCCTGTGTGCAGCCCGGCCCTCGGTGCTCCTGAGCGGCAGGCCAGCTCAGGGCACAGACCTGAAGGAAATGAGGAACAAGGGGCCTGCGACTCAAGTGACCTCTCCCCCCAAGCCCCCCCGCGCGCATGACTGGAGGCTGCTGGTGAAGAACATTAAAGCCACATGTGAGCCAGGGAGCAGTGCTGCAGGCAGCATTAACCCCTACTGTGTACTACAACTAGATGATCCCCCCCAGAAACTCTCCAGCTTGGTCTTAAAAAATACTTCCAATCCCTCGTGGGACCAGCCTTTTGTCTTCGAGCTCAGTGGAAAATCGAAAGAATTAAAGATCCAACTCTTGGACGAGGGAAAGCCGCAGGAGAGCTCCTTATTGGGTCGTGTTTCAGTGCCTTTTGATCTTTTTAAGAAGCACCCAAATGGACAGCAGGTGTTTGCTCTCAAGACTGAAGACCAAGTTACTGGGTCCCTTTCTGCTGAGTTCACCTACTTGGATCCCAGTGAAGTCCGCTCCTGGCAGCCTCCCACTGTGGTCCCCGCTAAGAAAGTGGAAATGGACAGGACTGTCATGCCCTGTGGGACAGTGGTCACCACAGTTACTGCTGTGAAGAGCAAGCCAGGGAGGTCCCCTCCATCTGCACTCAGTACAGACTCTCCGATGAAGGGTCCCTCCAAAGCAAAGCTGGGTGAGAGAAGAGTTTCTGAACAGCCTGTGTCGGGAACAATGGTCAGCAAAGCCCTGTCCTCCTCTGATACAGAGCTGCTGATGCTGAACGGTACTGATCCAGTGGCAGAGGCTGCCATCCGCCAGCTGCACGAGTCGGCCAAACAGAAGCTGAAATCCCCTGTCAAGAAgagcactattattatttcagggGTGGCAAAGACCCCTCTGTCTCAGGATGATGAGATGGCGCTCATGGCGGGGTATGCAGCAGCGATGGATGCCTCCATGACCCAGGATCTCCAGAGTGAGGTGGCCGCGCCCCCGGTGTCCGCACCGGCTGTGTGCGCAGCAGAGCTGGAGCTGATGGACCTCCAGGAGGGCCCCAGTGGGACTCCGTCTCTTGGGGAGTGGGAGGCCCGGTCGGCGCAAGACCCTGACACGGAGAAAAAGTCTGAGCTGTCCCTGAGCGTGTCCGAGCCCGGCGCCATCAAGAAGGGCAAAGGTGGGTTCTTGCATAAAAGTGCCAAGCTGTTCTTCCGGCGAAGGCACCAGCGCAAGGAGCCGGGAATGAGCCAGTCACACAACGACCTTGTGTACCTGGAGCACCCAGTGGCCGTGGACAAGGAGCGGCGGACTGCCACCCTGAGCCGCATCATTAACAAGAAGCTGCTTCcaaagagcaagagcaagagcaaggcCAACGGCACCACCATGGATCCACACGCGTGATCTTGGGAGAGCTAGGGgcgggtgtgtgtgcgtgcgtgtatgtgtgtgtgtgcgcgtttgACCACTGGATATTCTCCAGGGAACCTGCTGATGGGAGCACACAGTCCTTCAGCAgggcatttttctttctttttaatttcatggagAATGGGCGTGCATGTTAATCTGGGAGGATTTGTGGATCGATGCAGTAGAAATTGCATCACAATCAAAGCAATTGATTTATGGCAAACAACAACTTCCTTCTAAGATGGTGGCCTTTAAAACTGTCTACTTGGCTACTCTTTTTGTCAGCCCAAGAACTTTTTAACCAGAACCTGTGTTTGTACACTATAGCCATGTTGAAACTTTCTTGAAATCTACCCATTTTCACTTAAGGTTGCTGTTGGCGGCTGGGAGGAACAAGTGAAGTAATGAGATTCAGTGCAGATTGGAACTATGGTAACATACTTGAACATTATAGCAACACAAACATCTAATGATGGCATAAATTCCACCATGATCTGTTCTAGCCTTTCTCTGCTTCATACAAGTGTGTTGTTGATTCATTAATGTCAATTGCTGCAAATAATGTTTAACAATGACTACAATGCAAACCATTCAGGCTATTCCCCGTGTCCCTCCTACTTTATAGTGCATGTCATGTATGTCAATGGGAGATTGTTGGGGTAAAAGGGATAAAAGGCAATAGCACTGCACAGCTGGAAGCAAGGACTGCGATTCCTTCAGTTCTGTAGGAACCTGTTATGTGAGAAATAGTAATTGATTGTTAATCAAATTACTAATGgggtcttttttttaatcctattccaaaaatgaaagaaaatatttcttaaGCACTAATACTGTATAGAGCACTTGCCCATCCACCCCACCCTTACCCCCTTAAATTGTgctaaagtgttttttctttgtcacaCCCACAAAGGAAACcatttctgaattaatttcTGATCAGTTTTGATGACAAGCATTAATCACCACCTTTAGCACCcaagaagaatgaaaaacaggGTGGTGACAAATTCTGCTTACGAAAGATGTCTCTGGTTACTGTTGATTTGGATCCCATAAAGCCCTTTCATACAAACTGTGGTGCTAGGCATCTTGAAATGTTGTCATTGCTTTTGTATCTTATATATTCAATGTCACATGCATGGCAATATGCATTATCCTATTTCACTACATATTATCTAAAAACCTAACTATGCCCCCCTCTGCGTGATTGGTTTATATATTACTAAAGGATCCCTCtgcttattattgtaataaaaccTATTCTGCTTTTCTGTTGTGTTAAGGAAGCAATGAAATGCACATGCAAGATTGAGACCCTAATGCATATTCCACTCTGAAGAAAGAATGGTTTGTTTGtcgattttgtttttaactaaaaattatatataggAGAAGATTAATATAATTGAACTTATAATTGTAAAAGACTACATACAATAATGAAAAGCTCTACGATCGCAAGGACTGTGTAAGCTCGTTCCCAGCAGGACTAATAGGGCCCTGTCTGCTGACTTCAGGATTCTATTTGCATTCTTTTGTTCCTGAAAAACAGTGGTGTATCCTAGCAATATCAGTTAATCCACAGTAAACATATTACGTGTATGTACTTTTCTCTTATGGAAGCCAAACACTAATAGTTTACAGTACCTTAAGGGCACTTCTacgcactttttttttttaaacctgcgAAAAAATAGTTTTCTCTTCTGCTTTGCtccaaattagttttttttttttcctcagtgtaTTCTCAAAATCGTGTTCATGGTTCCAATGGATACTCCTCAAAATGCCTCTTGGACTTGGATTTTGAGGTGATCTTTACATTTGTTCATTCAACAGTTAAGCATCTGTTATTATAGGAGTGATCATCAATTATTTGttctcattcctgtttttttcaaattgtatcaACACTATGGTTAAGTTAAGGGACTTGTCTGTTTGGAGACAAATGGGAATGACACTAACCCTGAAAATGGCCTGCTGTAATGTGGTGCTGGTAATTAATGTTATAAGTTTGATTCTGTCAAGGgagtttttgtaatgtaaatagtGTTCTGatcagttttttctttatgGTTTCCATTACATATAACCGCTTTCAACATCTGTTGAAACTAATAGGGAATTGTACAGCTGGGGAAATCATTACAGATGTTTTGAACACTTTTCAGCCCTATCATTTCTTTATTAGCTAAGCATTTTTATTGGCATTCTTATCATATGCATCCAAGATGTAGACTACTGTTTTTATCCTGAATGGGCCTGCTGATGAATTGCTAAatggattaaatatatatatatgtgtaatggATCATAGAGGAGACCGCTGAATGAATCATTATCGGGTGGCTCTTGGCCTAAAATGAGAGCCAGAATGCCACCGTGCACTGGAACTAGTTTAATGCTGACCAGCATTGTTGTACATTCTGTATTGACAGACCGTGTCATTTATGCAAAAACTGTTAATGACTGTCAAGCTACACAATTACAAAGGGAGTGGAATATCTGGCTTTGCATTGTCTTCCTGACATTTGTCATCtcctgccttttttctttttacgaAGACTGGTGGTTTACAGGAGGAAACCTCTGCAGAAGAAATGCTTAGAACCCTTTCCTTGTGAGCTTTAAAGAtactcatttaaatgtattgtacagaatgcattaaagaaagaaaactaccATTTCAAGATCAATACTGTAAAGGTATGAGAGGCTGGCTTTCAGGGTATATTTTTCGATTACCCAACTTAATGGATACAAGTCAACTATGCCATCTGTCCTTATGACTTAAATACGGAGGAGAAATGGTTTAATGTGCCGTGGGTCTCGCACTGGTGTCTGCCACCAGATAAGAGGTTGATTTCTCTTTCGATTTGAGCTTAAATAATTTCAGTATTTACTCAAGCCTCTGCAATGCTGTTCTCGGTAACGCCATTTCACTATGTTTTAATAACTGTATGGAGCTCATTTCCTAGCAGTCAGTTGAAACTCAGTCATATATGGCAATGATAAATAATCCTGAAAGCGGCACTTCTCAATAAAGTGAAGGCTGTTTTAATCCTGAAGACTGTTCAGTTCTGAGCCTAACACACGCCTacctgaaaataatatatataatttgcctATGACCTGTAAATAATGTAACGGCTTACtgatattttctattatttacaATCTGTTCCATTTATTAAAGAGTTCTGATGCCGAATGTTAATATagaacattgaaataaatgcaatgcaggGATTATCACTAATTAACATATCAGGATTATAATTTGGAGCAATAAATATTGACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15219 lncRNA downstream 16453 13543348 ~ 13545718 (-) False AMCG00016246
TU15107 lncRNA downstream 461947 13097991 ~ 13100224 (-) True G12235
TU14937 lncRNA downstream 923473 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 1170763 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 1206807 12354675 ~ 12355364 (-) True G12046
TU15249 lncRNA upstream 44589 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 55637 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 55637 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA upstream 56031 13638697 ~ 13639590 (-) True G12358
TU15263 lncRNA upstream 74777 13657443 ~ 13659659 (-) True G12373
AMCG00016246 mRNA downstream 3360 13545139 ~ 13558811 (-) True AMCG00016246
AMCG00016247 mRNA downstream 19536 13535694 ~ 13542635 (-) True AMCG00016247
AMCG00016244 mRNA downstream 27196 13522174 ~ 13534975 (-) True AMCG00016244
AMCG00016248 mRNA downstream 67597 13484337 ~ 13494574 (-) True AMCG00016248
AMCG00016243 mRNA downstream 85126 13467358 ~ 13477045 (-) True AMCG00016243
AMCG00016251 mRNA upstream 2241 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016252 mRNA upstream 72372 13655038 ~ 13675532 (-) True AMCG00016252
AMCG00016257 mRNA upstream 247094 13829760 ~ 13840039 (-) True AMCG00016257
AMCG00016258 mRNA upstream 276667 13859333 ~ 13874048 (-) True AMCG00016258
AMCG00016259 mRNA upstream 292069 13874735 ~ 13879998 (-) True AMCG00016259
TU15220 other downstream 2987 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 691611 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 691611 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 699301 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1233138 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 1207537 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3275875 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3275875 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3275875 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 5508573 19091239 ~ 19105381 (-) True G13367

Expression Profile