RNA id: AMCG00016247


Basic Information

Item Value
RNA id AMCG00016247
length 3487
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00016247
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13535694 ~ 13542635 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAACAGGAAAGGCGCAGGCGTGCGTCAGTGAAAATGTGCACCTACCGCCACtttgatttgaaatatacatgtacagttTTGAAAGCCTTGGTGTCGAATTCTTTCTGAATcgtttgatttaaaatgtaaacccGCTCTACAGAATGAAGCTTTATTACACCTGTAGTGTACGTGTCATGGTAGAATAAGACGATATTGCAGACTGTAGTCGGAGCAGAGGTCGAAGGGCTGTGGCCGCCCTGGGCCCGTTTGCCATGGCGAAGAGAAGATGTCTGTCGGACCTGGTGGTGGCGTGTGAGTGGGCGTCCTGCTCCTTCAAGGGCGGCAGCATGGAGGAGCTGTGTGAGCACATGTCTCTGCACATGAAGGAGCACCTTGGAGATGGAGATGCAATGGAGGAGCTGGaCGACTACGCCTGCTTGTGGAACGGCTGTGAGTTCCTGGCGATGGGCAGCCCCGGCGAGCTGGTGGTCCACGCGCACTTCCACATCTTCCACGCCAAGCTGAAGTGCGTCGGGGAGCAGCTGCTGCAGACCCACCCCGAGCTGCGCACCTGCACCCAGGATCTTCATGGCAACAACCTGGTGCCGGAGCTGTCGGAGGGGCTTGTCTGCCAGTGGGAGCACTGCGACAGCACTTTCAACAACCCAGAGTGGTTCTATCGCCATGTGGACATGCACGCTCATTGTACCAAGAGGCAGACGCTGCCCGACCAACACCAGGTCCTGTTCTGTAGCTGGAAAGGCTGCGACGCGTTCTTTAAGATCAAGTACCGTCTCCGGGAGCACCTGCGCAGTCACACGCAGGAGCGTGTCGTGGCCTGCCCCACCTGCGGCTGCATGTTCGCCAGCAACACCAAGTTCTTCGACCACATCCAGAGACAGGCTGTGACGGAGGAGTCGTTCGTGTGTGAGCACTGTGACAAGCCCTTTGCCAACGAGAGGCTGCTGAGAGATCATGTCCGCCAACACGTCAACCACATCAAGTGTCCTCTGTGTGACATGACCTGCACCACCCTGGCCTCTCTGAAGACCCACATCAAGTTCCGCCACTGCGACGAGCGCCCGTTCCCCTGCGATTTCTGTGAGAGCAGTTTTAAGAATTCCCACGACCTTCGCAAGCACATGGAGACGCACAACGAGGGAGTGGCCTTCCACTGCACCGTGGATGGCTGCAAGTACTCGTCCCGCATGGCCCACACCATGAACCAGCACTACAAGCGAGTGCACGAGGGGGACATGGTGTCAAAGTATAAATGCCACCTCTGTGATAAGACCTTCTCTTGGTGCTACACACTCACCCTTCACCTGCGCAAGAAACACCAGTTCAAATGGCCGTCGGGACACTCGCGATTCAGGTACAAAGAGGACGAGGACGGGTACCTGCGGCTCAACATGGTGCGCTACGAGACAGTGGAGGTGACCGAGGAGATCATGAAGAACATGGCCAAGAAGCGCACCCCCCGCAAGAGCCTGGGCTCGGCCGGCCAGGCGAGACGCACTGCCCTGCCCCTGGGaaacaccccctcctccccctgctcctcttcctcctcttcctcctcctcctcctcctcagcttcttcctcctcctcaagCTGTGCCCCCTCAGCTGCAGAAGACCCCGCCCAGTCCCCGGCCACAGACACGGAGCACGAGGACGGAGGCCAGCCAGTGTACTCTGTCCTGAGCACCGTGACCGAGCTGGCCCTGGAACCCGAGTcctccctgccccctccccccctgcaGGGTGGCTCCTCTCGCGCCGTGGCAGCCCTGACTGAAGTGGCCCGAGGGTTGGGGATGGAGATTGTTTAGCTCCTCCTGTACAAAGAAAATGACGATTCGCAGCTTCTCACCTCCCTGTCTGGGGTTCTTGCACATTCCAAACCTTCAGAGTGTTTTCAACAGGCCTGGAGAAGGTCAAAGTGGACGGGCACGTTCTGTGACtgttttaatggattttaatgCCGTCCAAATTgatttgtgcttttaaaattcaattttatttttgattaacaATTTTAGAAGGTTTAAAAacgttttatttgatttgtacaCATATTTTAAACGATTCCTGTGTCAGAAGCAGGGTGGTGTTAATAAGAGAAGGCCCAAGCTAGTCAGAGGGAATTCTGGGCTGCAAATACGATGCAGCTGAAAAGAGGGTCTTTCAGAAGGATCGTCTGTTGTTACTGCTGTATCTCCTATTCAGTGCAGTTACTCTTCCATGCCGGACTGATGTGTTGGGGGGATCACAAGTGGGACTGCAGTGGGACTGTTCTTGGAGCGCCTGCAGACTGTGTTTTCTCGGCAGCACGAAGACTACATTCCCTTGAGGCCACTAACAAACAGCCGTGAACAGAAAAGGAACTGGGTTCTAATTTGCATGTGCTAATCCGAAGGGAAGTTGGAGGAGAACAGGTTGATTTGTGTGTCGTCTATCCATGGTGCTGGTACTTGGACCCTGACGAGGCAGACACGCAACTGGCTTTGACCTGGGGGAGTCTGGGGAGACGAGGGGGCATCTTGCAGTCCATTTGCGATCGCCAGTCAGCCAGTGACTGAAACAGAGAAGGAATCTGTTGTCCTGGTGTCTGATTTTTTCCTCGCAGAGACTTTAGTCCACATGCGTTTTGAACAATGCAGTGATCCCTCTCCAGAAGCTAAACACATCCTGTAAATTACATTGGGGATAGTGGTTATACTAATCACAGtcaatacctgaaataaaatgctatatattgtgcttttaattattaaaaacaaagttaatctatttgattttctttttaaaagttttgaattgattttatattttctgaactttttaatttactaCAATGCCAAAAGTGATGAGTTAAGCCTTCCCCTCCTAGTAATGGATTGTggatgtttttagtttttttgtattgaaggAAACTGTTACCAGCAGTGCATTTTTTGATACTAAGCCATTAGTGATTTTATGATTAGTGATTAGTGAGGGCCAGTGCATAAACTAACACCATGTCATAGACCTGCGAGAGAAAATCATGAATGCAGTGGATCATGAACGACAGTATTGAAAACTTGATTTCCTGCCAAGAGTCTGGACTTCTGTCTTAGAGACGACCCATTGGCACAACTGGAACAGCGAATTAGGAAGAGCCTACGGAGACAATTTCAGGCAAGGACGTTCACGGTGACCAGctctcattttgtatttggacATTTGTCAGTGCAATGCCTATGTAACGTGTGTGTGGTGTATCAGGTAAATCTGAATTGCTTACTTTGCACTAAGGTaaagcatttattcattttgatttaatctgcaaACCAGTGAAGATGTGCTTAAAATAACTATCTTTTAAAAAGCTGTAtagttttaaaaagctgtaatatttgttttgaaaggaatAATCtcatcattaaatatttttttctcaaacctGCAGTCTGTTTTCAGTGACTAAGATTGAAGGTTTATTATCACAGCAGTGGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15107 lncRNA downstream 435470 13097991 ~ 13100224 (-) True G12235
TU14937 lncRNA downstream 896996 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 1144286 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 1180330 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 1182313 12353160 ~ 12353381 (-) True G12041
TU15219 lncRNA upstream 713 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 84620 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 95668 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 95668 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA upstream 96062 13638697 ~ 13639590 (-) True G12358
AMCG00016244 mRNA downstream 719 13522174 ~ 13534975 (-) True AMCG00016244
AMCG00016248 mRNA downstream 41120 13484337 ~ 13494574 (-) True AMCG00016248
AMCG00016243 mRNA downstream 58649 13467358 ~ 13477045 (-) True AMCG00016243
AMCG00016238 mRNA downstream 464052 13065216 ~ 13071642 (-) True AMCG00016238
AMCG00016234 mRNA downstream 472929 13060741 ~ 13062765 (-) True AMCG00016234
AMCG00016246 mRNA upstream 2504 13545139 ~ 13558811 (-) True AMCG00016246
AMCG00016245 mRNA upstream 19536 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016251 mRNA upstream 42272 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016252 mRNA upstream 112403 13655038 ~ 13675532 (-) True AMCG00016252
AMCG00016257 mRNA upstream 287125 13829760 ~ 13840039 (-) True AMCG00016257
TU15028 other downstream 665134 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 665134 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 672824 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1206661 12323161 ~ 12329033 (-) True AMCG00016211
TU14519 other downstream 2687883 10846931 ~ 10847811 (-) False AMCG00016176
TU15220 other upstream 11950 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 1247568 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3315906 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3315906 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3315906 16858541 ~ 16861179 (-) False G12945

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_00647818_00652652.mRNA True 1692 mRNA 0.48 9 CI01000053 647708 ~ 652719 (-)