RNA id: AMCG00016251


Basic Information

Item Value
RNA id AMCG00016251
length 8558
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00016251
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13584907 ~ 13595151 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCGCACTGTCCCTTTAAGCGCAGGCGGACCGGATGGGTGAGCGCTGCGGGTAACAACCCTGTCAATCACCGCGCTGGAGGCCCGCCCACTACCGCCAGCAGCCAATCGCAGCGCGGCGCACACAGGATGGAGGGTCTGCTGCATTACATTAACCCTGCACATGCCATCTCCCTGCTCAGCGCCCTCAACGAGCAGCGCTTGAAAGGGCACCTCTGTGATGTCATCTTGATCGTGGGGGACCAGAAGTTCCGCGCTCACAAGTGTGTCTTGGCTGCAAGCAGCGAGTATTTCCAGTCTCTCTTTAGCAGAAAAGATGGTGTGGGCCAGGGAGCTGTGCAGCTGGATTTCTGTGAGCCTGATGCATTTGAGAACGTACTGAATTATATTTACTCCTCTTCTCTCTTTGTGGAGAAAGAAGGCCTGGCTGCAGTGCAGGAGCTGGGGTACAGTTTAGGAATCCCATACCTCACCAACATTCTGTCAAAAAAGCCACACGTTTCCTACACGGGCTCCAGAAAGAGGACATCCTTTTCAGAGGATGACGACAATGGCTGTCAGCAAAGGAGTGTCATTGTGTGCCAGAGTCGCAGTGACAAACCTGGTACCAGTGCTGTCCCAAGCAAAGGGCCCAATCCGGCATCACTAGCGGCTTCAAAGCAGTTTTCTAAAGAGGTTTTGTCAGCTCAATCTTCTAGAGAATCCAGTCAGAGCTGGGCAAAAGACAGCAGCAGTTCACTAGTGTATGGCTTGTCAAACGAGGCCCAGAGAAACGCACCCTCCACCCTGAGGAAGTCCACTGAAACGCCTGTAAATCTTGAGAGCAAATCTAGTCCAGCAAGTGCCCTCTTGAAGGGAAAGACATTACAGACATCGCCTACGAGACCACAATTGACGACCTCGGTTTCGTTTAATGATTCTTGCATACAGAAAAGAGAGCTGCCAAACAGCGCTGCTCAGAGTGAAGGTCAGAGCCCTCTATATAATTCCAAGCAGGGACTCCACACATTTCAAGCCAGGGCAGGAGAAGAGAGGCAGACCATCGATAGGAGTGGCCCGCTGATTAAAAGTCTCCTGCGTAGATCTTTGTCCATGGACAGTCCTGTCCCTGTGTGTTCCCCTGCATTTGAACTAAAATCTGTGCAAAGCCGGGAAGAATCAGTTGTAAAACCAGGGTCTGAAAAATGCACTGACGCAGAGCCTGTTGAACACaagcattttaaagacaaatcaAAAGGCATCCAGCCTCTGAGCCTCCGTCCTGAAATCTTCAACAGGTACAGTGAAGTAGAGAGTCGCAAACCAGAGGTCCATGTGAAAACTGAACCTAGTAGCCCCCTTGCTGATCCTTCAGAGATAATCCGGGTTACGGTCGGAGATAACCTTCCAGTAAACTTCAGAGACTTCCATCTCAGCATTGACGAAGCACCCAGAGCAAGTTATAAGCATTCTTTTAAAAGGAAGTCCAGGTTAGACCACAGAAGAACTCCTATTAAAAAGTCCAGGTATATAGAAGAGCGTGATTTTGAAACTGAAGACAATAGGCGAAGCGTAACGCCCCACAATTCTGACTCGGACGACGATATAGATACAGCTGAATTGAGACAGAACAGGATGTTTAAATGCTGGAGCTGTTTAAAGATATTCCGATCGAACACTGGCCTGTACCGGCATGTGAACATGTATCACAACCCAGAAAAACCCTACTCCTGTGACATTTGTCACAAGCGTTTCCACACCAACTTTAAAGTCTGGACACATTGTCAAACGCAACATGGAGTGGTCAAAAACCCGGCTCCTGCCTCTAGCTCGTACTCAGTGCTGGATGAAAAGTTTCAGAGGAAGCTGATAGACAttgtgcgagagagagaaataaagaaagccTTGATGGTGAAGCTGAGACGAAATAAACAAGGACTTGGAGGTTTGCAATCGCAGCAGTTTGGCAAGAGGAGCTTAAGAACGAGATCTAAGACGTACACTTGTGCTTACTGTGGGAAAGTCTTCTGGTTCCAGTCACAGTACAGACAGCATCTGAAGATGCACCCGGGGGAGAAAGCCAGCGCTGTGGCCGAAGGAGAAGGTCGATTTTCAAAAAAGCAGGACCAGCCCGCTagcctgaaagaaaacaaaagcaaagaggCGTACCCTTGCCGCCTCTGCAATGAGAAGCTTCCGTCGCTGTTGGAGCAGGGTGAGCATGAGAGGGAGTGCCGGCACGCCACTGTGTGCCCCTACTGCAACCTGAGGTTCACGACTCCCTCGCTCAAGAAGGAGCACGAAATTCAGTGCGAGTACAAGAAGCTGACCTGCCTGGAGTGCATGCGTACCTTCAAGTCCTCTTTCAGTATATGGCGCCATCAGGTGGAGGTGCACAACCAGAATACAATGACCACGAAGGAGCAGCTGTCGCTCTCTCTGCAGGAGCACAATGGCGAGGTGCCAGACCTCTCAGATCCCCTGCCACTGGGGTCTGAGCCCAAGGGCCCTGGCAGCTCTAAAGAAGAGCTGGTTTTCAGCGATTCCTCTGAGCAAATGCAGTTCGATTCAGAAGACTCCTCCTACATGCCGGAGGACCTGAGCGTGCCCCAGCCCCTGGATGAGGTGAAGGTGAAAGAGGAGCCGCCGGAGGAAACCGCTGTGGACAACGTGTCGGAGCCCCCAGCGGAGGCGAGCCCTGAGGAACCCAGCGTGTGGTCGTGCGAGAAGTGTGGCAAACTCTTCACCGTGCACAAGCAGCTGGAGCGCCACCAGGAGCTGCTGTGCCACATCAAGCCCTTTATCTGCCACATCTGCAACAAAGCCTTCCGCACCAACTTCCGCCTCTGGAGCCACTTCCAGTCCCACATGGCCACCGCAGAGGAGCCCGGAGCCAAGGACGGTGACCTGCGTCCCTCTTCGGCCTCTCCTTCACCGCCTCCAGCCATCGCTGCTGCCAGGCCACCACCTCCGCCTCCACGGGCAGCCTCGCCAGTACAGCCTCcgccaccagcagcagcagcagcagcagcagcagcagcaacaactaTCGCAGCTGCATCAGCTCTCACCCAGCTGAAGAAACCAGAGCAGGAGAAATCTCCCAGCCCTCTCCTTCCCAAGACAGAACCTGCCGAAGCACCTCTCACTCCTCAGGAATCGGACACACTCTTCTACCATGCTCCCACACTCTCTGCCCTCACTTTCAAAAGGCAGTACATGTGCAAACTCTGCCACCGTACCTTCAAGACCGCCTTCAGCTTGTGGAGCCACGAGCAGAGCCACACAAACGCATAGCCAGGGGGAAAGTGACCACCTCACATCTTGGCTGATTTGAAAGTTGATGTGTCCTGGTGTGCTTTGCTGCCCGATACGGCATACAGTTTTTAAAAGCGGAAGAGGATcagttgtaattgtttttctaaatcaaaGTAAagtcataatttattaatggcAATGGTTTTGCAAGAATTGTTCCAAAACGCTTCAAATTGTCAGCTGCCTAGCAAAAATAGGATTAATAAGtgcataacaaaatgtaactttgTAGTCAAGATCAGAGTTAAGATTTTCATGTATAGCAATAAGAATAGAGCCAATTTAAAACCTCATCTTGGAAACGTTTACAGTAAGTTTTGCACCTGGTGCCACGTAGTCTTTATCAATTTTGCAATCACACAATATGATCTAGCAACACTTTCTCATCTTCTCCACAATTATATTCTAGTCTGTCGGGATAAAGGAAACATAATCTTGTAGGTGAGTTATTTGTATTGACAGCAAATCTACCAAGTATGTAAGAAACCTAGAACAGGATTTAAGAAAcagacaaccccccccccccacacacacacacacacacagacaggtttCAGGGAAGGAGGTGATGCTGACCTTTTGTAATCATGTTTTGCTGGTAATCAAATTACACTAAAGTCAAAGCCAAAGGGGATTATTTTAAGGAAACTAGTATTTTCCCAGGTATAATCTATAAACGACATTTTCATATGTGGAGAAAGATTATCTACATTCTTGTGCACTTTCAGCTGAATGATTTTCTTTGCTGGTTTTCTTTGcaaagtatatttaaatcagcagATAATTGACACACATGTTTAGAGTAACccttttcattgttgtttcttttatattatCCCTGTTTTGCTGAAAAGGCAGGATTGTTGgcatgatttaattattttgatacaGGTGTGTACAAATTTgtattagaaaaagcaaatgaATGTATCTCAAAAGTTGTTGCTTTTCTCCCCCTATTTACAAGCTCCTTAGTGTTTTGCTTTGCCTGGTGATCTTGGAATTTAAGCGCctgatttttcactttttttccccttattcttttgtttacactctttaaatatatttaacacttTCTTTTGAATTAATAGCATTTTGTTAGAAAAAAGTGCATACATATTTcaactataatatatacattaagtGCTCTTGTAAAACACAAGAAAGTGACTTGTGTAAGAAAGTGACTCTTAGTTCTTTGATGAAAAGGAGCACAGTCTTAAAGTTCTATGCATTGATTCATAATTTTCTGACATAGGCTTAAAGGCAGGCTCTTCTAGTGGCACAACTGCACCATTACGATCCACAACAGTAAGTCAATTTATTAGCCTGTGTTATGTTATTGATGTCTTCCCTAAAGAAACCAAGCGTTTTAGAAACCAAAAAGCAGATCTACTACTGTCTGTTGCAGGAGACCAACTTTATGGCTTCAAAGGATTTGGTTTGCAAATGTTCGAGACGATGCAGCTTTTCTTGTGCAGCTCTTGACCTAAACAAAATTACGCCATCAACTATagaccatttttaaattgtaacattctatgaaaagaaaaaaaacaatccccaAATCTAATCTTTGCTGATCAATTAGTGGTGTAGTTAAAGCTAGTTAATATAAACATTGGCAGAAgattaaagtaatatatatatattgtggattGGAAAACTGTTTCTTGAGCAAATATCAGGGTTCTTTAGCATTATACTGTCATAAAGCGGTGATTTTTCCTCTCCATTTTCAACATTCTTAtgccttttgcttttttttgggggggggggttattaaCTTGGTATGGGAGGTGTTGCATACTTTTCTGGTAAACTCCTTAACCCCTTccacaatgataaaaataacCCAGTGGACATCAGTGTCATCACCAGCCTATtctgatccactgctggatgaaggtctgCCTAAGGTGTTTCCAGTTGCTTGAATCtagatgtaataataatttggttGTTCTATATTGGTggatttgtgtatatataaattataatttggtttattattattgccattaTCCTTGCAGTAATGACCCATGATGTTCCAGGGAACCGAAAATTCAAATGGgccatattttcctttcagttttgaTCTTTATCTTGTGGGGGGTCAAAGTCTCCCCAGAGGGGGGATGCCACAGCAccacaaactgaaaaaacacaatgtcTGACCACAGGCATCTTGAAAGCAATCAAactaatgtttaatttagtaCTGCATATATGATAAAGGCAGATGGCAGATAAGATACTTAAACATCTAGGTAaggaaaatactttttcagATTGTAGAAGATAGTATGAGGAAAAGTGTGTGCAACACGGAGTTGGGGGTGGGATTTCTTTGTACTATTTGAgatgtttgaatatttaatcTGAGTTCTTCAGCCTTGTTACAGCCTTCCTAATGTGTAAGGTAACATTTTGCTTTCCTTTATCTGAATTTATACTTAAATATTGCACAAAGGAGACTTGTTTTTGTCTCCCACAGTTGTATAATAGTAGTCGGCgtattgtgtttaaatttaaGCCTTAGAAAAGGGGTACTGTATCAGTACTCTTTAAGCCTGTCAAGACCCTCGCAAGCAATTGAATGAGTCTTACCATAGCTGGAAGAGTACATGGGATCTTCATTAGGCTTGAGTCCTGAATATTGGCAAGTGATATGCATGTCATATTTTCCTTCTTTCGTTGATTTATTTCAGAGCTTTGACAAAATGACAGGCTTTATTATACCAATAcagatttttagttttctcctttttgggaaaaaataaatcccaacTCTCTGGGTGGCAGGGATCTTGCATTCTTGTTTTATCTATCCATCTCATTTAAAGGTCAGCATCCCGGGAGCAAcctggaatatttttttctttgctagGGTTGCTTGCTTTGGAATACACAGTTGATGAAAGAAGGAAAGtacttttataatttaaactttatttttttgtttgctgaaacAGTATATTGCCTGTGCAAgtcaaattgtacattttgcagGGACcacaatattgaaaataattttggagagaaaaaaagatttaagaGTTTAACCTtctatatgtttaatttaataaaacaatactaaggacttaacatttttataaaggaTTTCTTCGGTTATATTCTCAGTCAAACATGAATATTTTGAAAGATTGTAAGACACAGAATGCGTTCCATAGATAAATGTACAACAAATGTGTTAGCATTTTGAAGAcctttgttgcattttgtaatgtttttcctgtttctctaaaaaacataaaatgctaTTTGGTATTTTCTGTGGTATCACTGCAATAACTCTGTTGATCCTTGTAACAATATGGATTGCGGTAATGTGGCTTCAGAAACTGCATTCTTGTGTTAGTGCTTTTTCTACTGTTCGTTTCCCTGGTTTCTTAgctactgaaaaaataaaataaacatttaattctgaAGCTCTGTTTTGACATACTTGGCTGCACTGAACTTTGCATTCATGGGAGTGAAATCaatagaataattaatttgaaaaaacaaacaccatgaACTGTGATATGCAATGAAACATCAACTCCGTACCATATTAGTCTGAAGCTGTAGGtcaatatttatacttttggGAAACAAACTTATTAATGCAACCGTTTCATGTTTGGAACTAGAACAGCACATTTAAATCCTGGTTTCCTTTTAGAATTTGATTtccaaataatataatttgaactttaaaaggcaaaataaaatgatgcataacaataatgtatttattatgacCTATCtacaatatatatctttaaCATAGGCTAACCCAATTTACTCAATCTTAAAAATTAAGttcaagaaaaaacaaggaaataaaatcagctCGAGCTTTATGAATGGGAATAAATTAAGCAACATGTTCTGATTCTAAAGTTATGCTGATCTGTAACTAAGGGCATAATGTGTACCGTCCAGAgcagtatttcaaaatacaggaaaatgtAGAATATTGCATATACAGCAATTCCCTTAGCTTTTAGCTCACTGATGTTCTACTTCTAATGTTATTTCCAAAGTGGAATACAAACCAGCAATAATGAATAAAGTCAAGATTTTGTATATGACTGCACATGgataaatcattttatttgccTGAGAAATGTTGATATATCTGTTCCAATATTGCCTAACATATTATGGGGTTTtcttttacttaaaaaaaaaaatagcattcaTTATCTGTAACTTACCActtgaaatacattaatgacaaattatttttttacttgcacTTTAGTGTTTACCTGCTTGGACAGGTTATAAAACTTGCTTGAATTGCCAACCTCTGTCTAAACATGGTGAAATGTTAAAGTAAAATGTTGTCAAGATCCTTAGATATCAGAAAATACTCTAGTCTCTAAACATGAGCCTGTTTGAGTGCTGGAGTTTATATGAAGGGTCATATCCAAACCCACCAACCACACGTTGCCTCTTTTCACAGACTATACTCATTGTTACTGTATTCAGTATTGCTTTGTGATGTGTGTATGATGTAATCCAACAGAGGGTTAATGGGCAACGCTGGTGACTGACACGAATCTCCTGAGCAGAAAAGGAAGGCCTAAGATACAGCGCAACACTGCCATCTGGGGACAATGGTTAGTGCATTTCCATACTGGATTGGAGTTCCAATAGTTGATGATGGAACAATAACTAGCTTTAATATCAGAAAGACTAGAAAGAGAACTAAATAAAGCTCGGCCCCATTTGACAGATGGTTGTTGCCATGGGTCACGAGATGTTTTTGTAACTATTTTAGCACATTGCACAGAAATGACTAATTTCTTGGCTGCGAATCAGGAAATGACTTTGGGAATGTTGACTGTGCTGATGCAGCTCTGGGGGATTCGGAGAGACTGGAAATCATGGGCTTTCCATTAGACCTCGGGGTTAAAGCTGGAGCATTTGCACAGATTCCACAGCACTGCACAAGCgctccacaaaaacaaacagagtgACAAGGAAAAGGCATTTAGATCACAACACAGGGAAACTCAACCCCTGGTTACAGCACACAGTACTGGGCAGTACCCTCTCACACAGGGCTCTTCAGTGACATGACTGTGCGGCAGCAGGCTGAATCAGTTAGAAGGGATGATTTTACAAGTGTTCCAAATGATGCTGAAATTGAGTTCTTTATAGAGTTTAACTttattaacaaatacagtacattacagttaagagtaacacatacacacacacacgtgtatatatatatatat

Function

GO: NA

KEGG:

id description
K24805 ZBTB21; zinc finger and BTB domain-containing protein 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15219 lncRNA downstream 39189 13543348 ~ 13545718 (-) False AMCG00016246
TU15107 lncRNA downstream 484683 13097991 ~ 13100224 (-) True G12235
TU14937 lncRNA downstream 946209 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 1193499 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 1229543 12354675 ~ 12355364 (-) True G12046
TU15249 lncRNA upstream 32104 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 43152 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 43152 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA upstream 43546 13638697 ~ 13639590 (-) True G12358
TU15263 lncRNA upstream 62292 13657443 ~ 13659659 (-) True G12373
AMCG00016245 mRNA downstream 2241 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016246 mRNA downstream 26096 13545139 ~ 13558811 (-) True AMCG00016246
AMCG00016247 mRNA downstream 42272 13535694 ~ 13542635 (-) True AMCG00016247
AMCG00016244 mRNA downstream 49932 13522174 ~ 13534975 (-) True AMCG00016244
AMCG00016248 mRNA downstream 90333 13484337 ~ 13494574 (-) True AMCG00016248
AMCG00016252 mRNA upstream 59887 13655038 ~ 13675532 (-) True AMCG00016252
AMCG00016257 mRNA upstream 234609 13829760 ~ 13840039 (-) True AMCG00016257
AMCG00016258 mRNA upstream 264182 13859333 ~ 13874048 (-) True AMCG00016258
AMCG00016259 mRNA upstream 279584 13874735 ~ 13879998 (-) True AMCG00016259
AMCG00016262 mRNA upstream 317771 13912922 ~ 13921956 (-) True AMCG00016262
TU15220 other downstream 25723 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 714347 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 714347 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 722037 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1255874 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 1195052 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3263390 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3263390 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3263390 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 5496088 19091239 ~ 19105381 (-) True G13367

Expression Profile