RNA id: AMCG00016256


Basic Information

Item Value
RNA id AMCG00016256
length 4144
RNA type mRNA
GC content 0.46
exon number 14
gene id AMCG00016256
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13676994 ~ 13705883 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATCAATCTGTACATCAAAGCATTGCAAAATACGTCTGCAGCAGAAGCAGCCAGGGCGACTGAACTCCGTCTTTTCGGCTGAGAGCGGTGTTGCCCCTCCACTCCAACCACAGACCACCATGAAGGTTGAATTTGCTCCAGCGAAAATCCCCTTCACCCGGAGACTGCAGACTGCTGCGGTGCTGCAGTGGGTGTTCACCTTCCTCGCCCTCGcgcagtgctgctgtgtgctgttCATTGCCCTGCTCTTCACCCGTTTCTGGCTGATCAGTGTTTTGTATGCCACCTGGTGGTTCATTGACCGTGACACACCATCGCATGGAGGCCGGCGGCTCAGTTTCATGCACAAATTGCCCATGTGGAGGTACCTGCGGGATTACTTTCCTGTCAAGCTGGTGAAGACAGCCAATCTGGATCCAGGGAAGAACTACGTGTTTGGGTTCCACCCCCATGGGATCCTGGTGGCCGGGGCCTTCGTGAACTTCTGTACCCTGACCACCGGCTTCATGCAGCTCTATCCCGGGCTGACCCCTCACCTTCTCATGCTGCCACTGTGGTTCAGAGTGCCCTTCTTCAGAGACTACATCATGTCTGGAGGGCTGATCCCCTCAGACAAGGAGAGCGCCCGGTACCTACTCCAGCGTCAGGAGGGGGGCAATGCGGTGGTCATCGCAGTGGGAGGGGCTCCAGAGGCCCTAGACGCCCATCCAGGGGCCTTCACCGTGCTTCTGGCCAACAGGAAGGGCTTTGTCAAGCTTGCAATAGAGAACGGGGCCCCACTGGTGCCGGTGTTTTCCTTCGGGGAGAATGAGGTGTTCGACCAGGTGGAGAACCCACGGGGGACCTGGCTACGTTGGGTACAGGAGCGTCTGCAGAAGCTGATGGGTGTGTCGTTGCCACTCTTTCATGCTCGAGGTGTCTTCCAGTACAGTTTTGGCCTCATCCCCTACAGGAAGCCCATCTTCACAGTGGTTGCATCCCACGCTTCAGTCATGAAGACCATAATCGCTGCCTATTCCGGCGTGCTGCGAGGGACTGGCTCCAGTATCCTGTCTGCCCTGCAGGACCTACCCTCCGCCCCATGGCTGTCGCGCTCCAAAGTGGAGAGGCATCTGCAGATGATCTCGGTGATGCAGTGGGTCCTCACCTTCCTCATCATGGGTATTGCGTGCACAGTGGCCCTGATGTACTTGTTCTGGACAGACTTGTGGCTGATTGCTGCGACCTACACTGCATGGCTGATCTTTGACTGGAATACGCCAAAACAAGGCAAGCTGCTCAACACAAACATCCGTACAGAACTGGTTCAACAGACTTTTAAGTCCATGCATAGTACAGGTCCTTACAGTGCTGAGAACAACAAGCACAGGGGGAGAAGATCGTCCTGGGTCAGGAACTGGACGGTGTGGAGATATTTCAGGGACTATTTTCCTGTCAGGCTGATTAAAACGCACCCCCTGCTGCCCAGCAGGAATTACATCTTTGGGTACCATCCCCATGGCATCATGTGTTTTGGAGCATTCTGCAATTTTGGGACAGAAGCCACCGGCTTCTCCAAGAAGTTCCCTGGTATTCGGCCTTACCTGGCCACTCTGGATGGAAATTTCCGGATGCCAGTGCTGAGAGAGTACTTAATGTCTGGAGGTATCTGCCCAGTGAATCGTGACACTATTGACTTCATTCTGTCCAGGAATGGAACGGGCAATGCAGTAGTCATCGTTGTCGGGGGAGCCGCAGAGTCTCTGGACTGTGCTCCGGGTGTGAACGCCGTCACCCTGAAGAATCGCAAAGGATTTGTGAAGCTGGCTCTGCAGCAGGGTGCCGACCTGGTGCCTGTGTATTCATTTGGAGAGAATGAGGTCTACAAGCAGCTCATTTTTGAGAAGGACTCCTGGGGGAGACTAATCCAGAGAAAGATCCAGAAACTTCTGGGTTTTGCCCCCTGTTTGTTCCATGGATGTGGCCTGTTCTCTGATGACACTTGGGGCATAGTGCCATACTCCAAACCCATCAACACCGTGGtcgGAGAACCCATCACCGTCCCCAGGATCGAAAAGCCGACCGAGGAGCAGGTCGGTCAGTATCACGACATGTATATCAACTCCCTGCTGAAGCTCTTTGAAAAGAACAAGACCAAATTCGGCCTGCTGGAGAGTGATGTCCTGCACGTCCACTGAAGATCCTGAAATCTCGTGTGGATCGGCTCGGTTTCACCCCTGGACAAGTGCCTGGCTCTGAGATTGGCTCTGGATCGATTGTATTTATATACCCCATACTTACAGTATCATTCCAAAAATGTAGCAAACAATTGCAAGTTTTGGGTGACGACTTAATTGGTGTAtgatgcttttttgttttttgtggagaaCATTTGCATACTGTGTATAGCTTATGTGAATGTACAAAACGAGGTTGGCTTTGAGCTCTCGTAGACGCTGGTTTCATTAATCCAGTCTGAAAAGTATCCTACAATTCAAAAATTTGAGGAGGGGCGCAGATCTGTGTCTCGGCCATAGCTAGGAGCTCCACCGTTGGGTCAAGTGCAATAGATGGTCTGAATGTGTTAATATGTTCCACCACTAGGTGGGACTATAGCTCAGTCTTCAGGTAGGTTTTGAGACTCATTTtaaagcaggggtgtcagactccagtccaggggggctgcagtgtctgctggtttttgttccagcaggagctcccaatttcttaatgtcattatttactccaGTAGGCTTAtccaaaactttattttattttttatagccaCTACCTTACAATGTGTTGATGACTCTCaacattgaacccacagaacatttcagagtctggagataagtgttaaattaatccagttaattgatttaattagattaagtttggctggaacaaaacccagcagaaacTGTGGCCCCTCAGCACTTGAGTCTTGACACCCCGGTTTTAAGGGAtctagatttgtatttattttttgttgctaAGAGTTTGAAAGATTTAAACTCTGGTTTCTTTTTTGACCGAAGTATCCTAGAATGACTTGCACATACCCAGAGTTCCCCTAAggtgtcatttattttcatacatggAAATCATGTTGTATACCCTGGACAAAGACCATAAGCTTTCATTTaagatttgttatatttttttgtatgcactTTTAATACTCCAACCACTTAAttcaaatggtttaatttgcaTAGTTGTGGATTGTTCCATTGAACTAGTAtaggattttaaaaaaatgcacaaacaatGCAATTTAAAGGGCTTTTGCCCCACAAAGTCACACTTTAAATGGGTTagtaaaaggaaaaagagaacaaaagcCAAAGAACTTGGGTGTTTGAATCGAGATGTACAGTCTTTTGTCCTATGCCTTCATTCTCCCTACTGGTGATTGTTGCCATATTGTTCTTTCATGCAGTATTTAGAACATTTCGGCAGAAGTAAACTTAAATGGGTGCAGATGTAGCCAAATTGTATTAACCGAAGACTTAGACCAGTGGTATGTCTGTGATTCAGTGATGCTATCTGAATGTTGAAgagatgtattttgtgtgtctgtgtataggGGGGGTGTCACTATAGAAAGACGTCCTCTTATTTGTGCTAATTCTTATAGTATGATCTTTATCTTGTGAAGAATTTGCAATAATTCAAGTGTTTTCATCCACGGtgtgcatataaataaatgggtTGCATTGTATAAATAGCCCTGTAATTCCAAATGAATCTTGTGAATGTACATGTATACCCAGATCTGTATTGGCACATTTGTGATGTTTTCTAACTGTATTCCcgttataaaaaatgtttacaccTCTTAAATGGATTGTTTAATGGGaggttttaatttcaaattttgcACTTTAACTGCATGCTTCACCATTGTGACCTTGGCTTGGTGGATTATTGTTTGAATTAAGTGCAATGAATACtgcaattacattaaatgtctTGCATATGCTGTATACTTTTTACAATCTGCTTTTCTAAATAATACtgttcaaatgttttgtatatgtttagaaaataaacttGTAAATAAAGTCttatttcttttatatttttacattatttttttcctgccttATTCTTTTCTTCCCCAAACTGTATACAGTGTCTGTAACTACTCCACAAAACCAC

Function

GO: NA

KEGG:

id description
K11160 DGAT2; diacylglycerol O-acyltransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15258 lncRNA upstream 17335 13657393 ~ 13659659 (+) True G12368
TU15231 lncRNA upstream 37406 13638302 ~ 13639588 (+) False G12347
TU15232 lncRNA upstream 37844 13638302 ~ 13639150 (+) True G12347
TU15215 lncRNA upstream 125136 13551594 ~ 13551858 (+) True G12331
TU15214 lncRNA upstream 130396 13546399 ~ 13546598 (+) True G12330
TU15299 lncRNA downstream 123851 13829734 ~ 13830887 (+) True G12406
TU15406 lncRNA downstream 476722 14182605 ~ 14184686 (+) True G12487
TU15409 lncRNA downstream 489052 14194935 ~ 14196634 (+) True G12489
TU15493 lncRNA downstream 678022 14383905 ~ 14384657 (+) True G12549
TU15511 lncRNA downstream 691366 14397249 ~ 14398414 (+) True G12566
AMCG00016250 mRNA upstream 59350 13597834 ~ 13617644 (+) True AMCG00016250
AMCG00016249 mRNA upstream 88021 13583044 ~ 13588973 (+) True AMCG00016249
AMCG00016242 mRNA upstream 221078 13445038 ~ 13455916 (+) True AMCG00016242
AMCG00016241 mRNA upstream 287377 13387962 ~ 13389617 (+) False AMCG00016241
AMCG00016239 mRNA upstream 429978 13212058 ~ 13247016 (+) True AMCG00016239
AMCG00016255 mRNA downstream 1331 13707214 ~ 13714691 (+) True AMCG00016255
AMCG00016254 mRNA downstream 20488 13726371 ~ 13742178 (+) True AMCG00016254
AMCG00016253 mRNA downstream 70639 13776522 ~ 13783628 (+) True AMCG00016253
AMCG00016260 mRNA downstream 174923 13880806 ~ 13895173 (+) True AMCG00016260
AMCG00016261 mRNA downstream 244024 13949907 ~ 13954292 (+) True AMCG00016261
TU15237 other upstream 39993 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 45197 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 49283 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 895130 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1805259 11868825 ~ 11871735 (+) True G11921
TU15538 other downstream 731888 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 2778472 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 2778472 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 2778472 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 3410910 17116793 ~ 17121932 (+) True G13012

Expression Profile