RNA id: AMCG00016257


Basic Information

Item Value
RNA id AMCG00016257
length 2312
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00016257
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13829760 ~ 13840039 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCGCAGAGCGGCCGGCGGACTCGCACTCACACCGGCGCACTGAGGGGatgcgctgctgctgctccgGGCTCTGCACTGGCCAATAGCCGCGGATTTCCAAACTTGTTTTGAGGGCTGGACGTCAATGAAAAGGATACCTTGTTGGATATTGCAAGACCATTTGTACATGAACATACGCAtctataatatatagatatttttaaagagagagagacctgtaTACAAATCTGAAAAGCAGACTGGACACccaaaggaggaggaggaggagaacagTGCCGTTTTGAAAGTCTTTTTAAGAGCAGCCGTCAGATAAGAAGCTCTCTCAATACAATTCTGGTTCAGTTCTGCCCTGATTTGGACTGAAACATGACATCAGCGCTGCGCTTTGTGTCAGTGAGTTTGCCCATTCTCCTGCTGCAGTTGGAACTCTGCTCTGGAATTAAATGGCTAGCTCTGGCCAAGACGCCTGCGGCCCTGTACCTCAACCAGACCCAACACTGCAAGCAGCTCCAGGGGCTGGTATCGTCTCAGGTGCAGCTGTGCCGCAGTAATCTGGAGCTCATGCAGACTATCATCCAGGCGGCCAGGGAGGTGAGGAAGACCTGCCAGAAGACCTTTGCCGACATGCGCTGGAACTGCTCCTCCATCGAGACCGTGCCCCAGTTCCTGCCGGACCTGGAGAGAGGAACGAGGGAGTCTGCGTTCGTGTACGCCCTCTCTGCGGCCGCCATCAGCCACACCATCGCCCGGGCCTGCACCACGGGGGACCTGAGGGGCTGCTCCTGTGGGCCCATCCCAGGGGAAATCCCTGAGCCGGGCTACCGCTGGGGGGGCTGCGCAGACAACCTGCACTATGGCCTCCTCATGGGCTCCAAGTTCTCCGATGCTCCCATGAAGATGAAGAAGTCGGGCTCGCAGGCCAACAAACTGATGCATCTGCACAACAGTGAAGTGGGAAGACAGGCCCTGCGTGATGCCCTCGAAATGAAGTGTAAGTGCCATGGAGTGTCAGGCTCCTGCTCCATAAAGACGTGCTGGAGAGGCCTGCAGGACCTGAAGGACATCGCGATCGACCTGAAGACCAAGTACTTGTCTGCCACCAAGGTGGTGCATCGGCCAATGGGGACGCGCAAGCAGCTGGTGCCTAAGGACATCGACATCCGGCCCGTCCGAGAGAACGAGCTGGTGTACCTGCAGAGCTCCCCCGACTTCTGCATGAAGAACGAGAAACTGGGCTCCTTCgggacacaggacagGCAGTGTAACAAGACTTCCAACGGCAGTGACAGCTGTGACTTGATGTGCTGTGGCCGTGGCTATAACCCCTACACGGAGAAACTGGTGGAGAGGTGCCACTGCAAGTACCACTGGTGTTGCTACGTGACGTGCAAGAAATGCGAGCGGACTGTGGAGAAATATGTGTGCAAATGAGCTGCTTCTTTCCGTCGCTCCTAAAACCCCTACAAACAGCAGATAACCAAAGCACTATGTACTGAGAAGGCTTAGACTTGTCTTAAGCTCCAGCCTGTATATTTTTCCACCAAGAACAactgcattttctattttaatttttttttaaaggaactctGCCCCAGCTGGACCTAATGTTTACGAAAGCTGAAGCGAACATTCCTCAAGGATTTTCGTAAATGTGGATGATTGGAAATctattttgttatacatttatatatggtgtgtatatatctatatatatatatctatatctatctatgtatatatatctatatatatatatacacagatagaTATAAAATGATATTGGATGTCGGAGTCAAACCTCAGTGTGTGGACAATAGGTGCTGCATTTCTAATCTTGGACCTTCATTGGACTTTTCATTATTGAGTTCAAAGCCATTCCGTGGAATTTCAAGCATTTTGAGACATCTGTGGGATTATTTAATGGTACTCTTTGAGAAGGAAGACAAAAGGCTCTGAACATGGAAAGGAAACGGCAAATACTGCTTCCGTTGTGGGACTTTGAATAGTTTTGTGTTCAACGTTTGGATGCCTAGTTAATCTCTGAAGTCTTGGGAGAAGAGAAGACTGCATTTATGTGTATCCCTGGCAAGGACAGTAAAATGAAGAGTATTTGCATTGTTAAACTTCCCATAACGTGAGGAATGCAGATAGGCCAAAGCTAACACTTCAGAGCATGTGAACTGTTTACGTGGGATTCCCATGACAACAGATAATGAACCACTTTGTGTGGATGTACATACTGTCTTTTGTATGCgaaatttaaagaaatatttataaactaaTTAAAGAATCTTTACCAAACCCTTAAA

Function

GO: NA

KEGG:

id description
K01384 WNT11; wingless-type MMTV integration site family, member 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15263 lncRNA downstream 170101 13657443 ~ 13659659 (-) True G12373
TU15247 lncRNA downstream 190170 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA downstream 190170 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA downstream 190170 13638697 ~ 13639590 (-) True G12358
TU15249 lncRNA downstream 190610 13627255 ~ 13639150 (-) True G12359
TU15533 lncRNA upstream 580382 14420421 ~ 14427290 (-) False AMCG00016281
TU15536 lncRNA upstream 587586 14427625 ~ 14428817 (-) True G12585
TU15547 lncRNA upstream 591573 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA upstream 591679 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA upstream 591679 14431718 ~ 14436437 (-) False G12594
AMCG00016252 mRNA downstream 154228 13655038 ~ 13675532 (-) True AMCG00016252
AMCG00016251 mRNA downstream 234609 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016245 mRNA downstream 247094 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016246 mRNA downstream 270949 13545139 ~ 13558811 (-) True AMCG00016246
AMCG00016247 mRNA downstream 287125 13535694 ~ 13542635 (-) True AMCG00016247
AMCG00016258 mRNA upstream 19294 13859333 ~ 13874048 (-) True AMCG00016258
AMCG00016259 mRNA upstream 34696 13874735 ~ 13879998 (-) True AMCG00016259
AMCG00016262 mRNA upstream 72883 13912922 ~ 13921956 (-) True AMCG00016262
AMCG00016263 mRNA upstream 96584 13936623 ~ 13936850 (-) True AMCG00016263
AMCG00016267 mRNA upstream 116728 13956767 ~ 13970852 (-) True AMCG00016267
TU15220 other downstream 270576 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 959200 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 959200 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 966890 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1500727 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 950164 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3018502 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3018502 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3018502 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 5251200 19091239 ~ 19105381 (-) True G13367

Expression Profile