RNA id: AMCG00016258


Basic Information

Item Value
RNA id AMCG00016258
length 8358
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00016258
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13859333 ~ 13874048 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGGGCTCTTCCTGTTTTACTGGTCGCCTGAATTACATCACGATTAAATCTTAAGTTTTTTGGACCATATTTTTAATCATGCTATGAATAGTTCGAGGAACATCGGTGAAATGGACGTCTAGACAGCGCATAGTTTCAATCATACAGAGACTAGCATACTATTTACTTGGGAAACTAGTAAGATGCAGATTTCAGTGTGAGTGTTTTAAAATTGCATGCAGCCCAAAATGCCCGAGAGCTGTGCCGCAGTGAACTGCACTCCGTGTGCAGAGCAGTCCGGCGTCGCTTTCTTCAGGTTTCCCCAGGACCCAGTGCGATGTAAGCAGTGGCTGGATAACTGTCGCAGACCAGATCTGGAGCAGAAAACACCCGAGCAGCTGCACAAGCTCTACAAACTGTGCGCCAGACACTTTGAACCCTCCCTGATATGCACAAATAGCACCCTGAGGACAGTTCTAAGGCAAGATGCTGTTCCCACCATATTTGACTTCACCAGCCACCTGACCAATCCCCAGAACTGCAACAGGAAACGAATAAGAGATGTAGAAGAAGTGTTGATTGTGAAGAAACCAAAAGatgaTGGATCTTGTACCCCACCCGAGGAGCTGGGAGAGAACAGTGCCGCGTGTGAACTGGAGCATGATGCCTGCAGAGAAGAGGAGCCCTCCTTTTCTAAGGCCAAGGAAACCCTCAAGCTGTATTTTAAGGAAACTCTAGCCTTCACTGGTTTCAGCATTAGGAGTAATGCTAACACTGGAGAGTCCTTGGAAAGTCACGCTGGACTATCTCGCCTGAACTCTGTGTGCGGCGACAAGATCGATCAGAAGGAGGTGCTGCAAGTGGGCGAGGAATGCATGCTCGACGAGATTCGGAACAGTTTGCGGTCTGCGCGCTTCTTCTCTGTTCTCTTGGAAGATGTGGCAAGCATTGACGGCAAAGACCTGATTCCCGTCTTCATTAGGTCTGTCACTGTGGCAGGATTCCCACAGAAGCATTTAATGGGATTCCTGCCCAGCGAGGTGGACGCAGAGACCTTGGCTTACATGCTGCTCTCTGCTGTAAGAAATAAGTGGGGACTGCGAATGGAACATTGCAGAGGACTGACCTATCTAACCAGTGGGTGCATCAGCCAGAAAATGAAGGATGTAGCCAGCAGGATACTCCGAGACTTCCCACAGGTTGTGCTCACGCCTAGCGACCCGTACGCCTTCAATGTCTGGCTGATCCGATGCATGCCCATTGAGTCCATCCAAAAAGTGGTGAACACCGTGGAAGAAGTTGCTGCTCTTCTCAGAACGTCTTCAGTTCTTCAAAAGAAACTAGATGAAGAGATCGTCAGGGTGTACGGGCACGTCAAGGGTGAGGTGGATAGGATCCGTGAGGCCCGCCAGGTTCATTGGGAGTATGGTGCCGATGCCTTTCAGACAATGTTGGACCTATTGGAGCCTTTTATTAGGTGCGTAACGAGGGAGGTGAATGACAAGGAGGACATGGAAAACGCAGAACGCATAGTCAAGCTGAAGCTAGTGCTGAACGATTTCAACTTCATCATTACACTCGTAGTTTTAAAGAACACTCTTTGCTGTGTGAGCATCCTCAACCCGAGCCTTAAAGGAACCATCAGCATCAGCAGCACCTTGCAGTTTACCATCTCGAATGCCTTAAAGCTGCTCAGCAAACAGATGCAGGAGATCGCGATTTGTCATCGGAAGTGGTTCACGGAGGCCTGCACCAGGGCAAAGAAACTGGGCGTCGAAGTGACGTTGCCAGAAAACTCTGAGAAGCCCCCGGAAGGAGAAGAGCAAAAGCTTCAGACCTCATTGGAAGACTTCTATCGGGCTGAGGTGAGCACTCAGATCCTGCAGTACCTCATCCAGGAGGTGAAGCAGGTGTTCAGTTCAGAAATGGTGAGGATCCTCAGGTGGTTGACTCTAGTGCCTTCTTATATGGCAGACCACAATTTCAGTATCCGCAGGGACAAGGTGGCCGATGCCAACCTGAACAACCTGGCCAGACCAGACTCGTTTTACGACGAGCTCGGCTGCTGGGAGGTGAAATGGAAACATGCCAGCAAGCGCAGGATTCTACCCACCACGGTTTTTGGGACCTTGAAAATTCCCGACATAGAGTTCTACCCCAATGTCCAGAGCCTGCTGAAGGTCCTGGGAACCATCCCCTGTGTGAACGTGGAAGCAGATGTGTACGGGCAGTATGATATGGTTCTAGAGCGTTACCACTCCTACCTGAGAGCCACGCTGCCCCAGGAGAGACACTCCAACATGACCTTCGTCTTCGTCAATCAGGACGTGCACTTCAGTGTGGAGGACATGGTTGATGTGTATGTGGAGAAGCACCCGGGCATATTGAAGCTTTTGCACACGgaaGAAGAGCCAGCAGAGCCCCAGTTGACAGTTGCTGAGGATAATGAGAAATGTGTCCTAAAGGAAGAAGTAGATGAACCAGAAATAATGGCAGTTGTGGTGCAAGGGGAGAGCACAGAGCTTTCCGGAAGTGCAGAGGAAGACCAAGAAACTCTGAAATCTGCCCTGAAATCTGTAGTGAAGATGGTATGTGGCAGCCAAAGCACGCAAGGCTCAGAAGTTGGTGCAGAACCCGAAAAGGAGGAAGTGTTAAATTGTGTGCCCAAATCACAGATGAAGGAAATCCTTGCTGCTTGTGAAGATGTCATGAGGGAAGGGATCCTTATGGAAGTAGGAAATTCCTACTTCTCCCTTTTCATCGACCGGGTGGTAACATTTGGGGAGAAGGATTACCTGCCGCTTTTCCTAAGGTTTGTTGATAATTTTGATATTATGAGGTTGGAGCTGATGTGCTTTGTAGATGCTGATTTGGACTCTGGCACCCTGTTTGATCGCTTGTATTCGACCATTGTTGACAAATGGCGTCTTGACTGGACTTACTGCCGAGGCCAGGCCTACCTTGGTTCTGGTAAAGTTGCCTGGAAGCTGAAGGCCTTTGCATCCAAAATCCTGGAAACCTACCCGCTCGCCATCTGCACGCACTGCTCCTGCTACTCTTTTAACATATGGTGGTCAAAATCCATACCTGTTCCTGCCATCTGTAGAGCACTGGACACAGTGGaggaaatcattttgtttttcagcagttCCCCCATACTGGAAAAACAGCTGGATCAGGTCATTGCTCTAGGTCTCAGGGAAAGCTATGAAAAAGTCCAAGAGTTACAGGGGACATTTTGTGCGCAGTGGCTGGAGAAACATGACACCTATGAAGTGTTGGTGCAGATGCTGGAGGCCCTAGTTGAgtgtttagaaaaaataagaattgaCAAACAACAGAGGTGGAAAAGCACAGTCTCCGAACAAGCTGGGAGACTGTTAGGGACAATTAGAGACTTTGATTTCATTGTTTCAATGGTTGCTCTGAAGAACGTCTCCTCTTTCACCAAAGAGTTAAGTGCTGGCCTCCAGAAAGACCATTTTACAGCTGCCACTCAGCTCTGTCAGATCAATGGGATCTTGTCCACCTTGAACAGGGTGAAAACCGCCATAAAGGTGTTCCATCAGAACTGGTTTGATGAGGCTTGCACACTGGCATTAAGCCTATCTGTTCAAATCAAAGTGCCTGAAGGTGCCAGTGTGTCCAGGGATACCATGGTAAAACCAGTTGCTTACTACAAAGACACACTGAGCATGCCTCTTGTGGACAGCCTCATTAATGCTGTCAAGGAATATTTTTCTGATGAACACAAGGAGGCCTTGAACTTCCTGTCTTTGGTCCCTTGCTCAATGACTGTAAGTTACATGTTTGAAATTCTGAAGTCTAAGGATCCCCTTTACATCAATGATTTGCCGGAGCCAGATAACTTTTTCACAGAGCTCTGCTGCTGGAGGGTGAAGTGGAAAACTAGAGTCACGTCCATTAAAATCCCAGACACCATTTTCCACACGCTGCGCTTACCTGACATCCGGTACTTTGGGAATGTTAACACTCTGCTGAGgataatgtgtgtgttgccGAGCACCGCCATGGAGTATGGTGGTGAAGCGAGACGTCACAAGATGTTCCAGGATTACTTGAGAGCTTCTTCAAATAAAGAAAGATCCCCCAGCATGGCGATGCTGCAGGTCGGCAGCAACCTGACTAGAGATCTGGATCGGATGGTCGACCGCTGTGTAAAGATTACTTCCAAGACTCCAGAGGCTCGCACTATGgaTAAAGAACTGAAACCTGTGGTGAAAGATGAGTTTGACATGGAGGTAAACTGCCCTCCAGTGAAAATAGAGGAATGCAAAGTAGAGGATGAGCCTGCAATAACAGAGCAGTCCCTGGCAGTCACTGATGAGAATGGACATGCAGGGGAGGACAGGCAGAGTCTGGAAATTTTCTTCAAAAAAGCCACTGAGCTAGGAAGGATGAACTGCAGAGTTCCAGACCTCTCCACTGAGGACCAGCAGGCCCTCCTCCAAAATCTCAGGAATGCATGTGACTGGACAGCAGGAGTTGACCATAATTCCTCTGACATAAGTCTTGAAGAGGTCCTGGAGATGTTAGTAAGATCCATCAGGCAGGACATCCTCTTGGAGATTCAAGAAtcccctttcttttctttgattACAGATAACTTGTATGAAATTGCAGGTAAGAAGTACCTGCCCACATTCATCAGATATGTTGTTGATGGCGCTCCGAAGGTGGAGCTGATTGGCTTTCTTCCCtatgatgatgacaatgatgatgTCCTAGCAGAGAGTTTGCATGCTGTCCTTGCAGAGGACTGGGGACTGCAAATGGAATATTGTCGTGCACAAGCATTCATGAGGTTTGGAGCTGAAGGCCTATCTCTCAAAAACGTGTCCTCTGATTTCCTCAGGCGGTATCCCCTGGCAATCCACACTCCCTGCTCTTCCCAAGGCCTAGTATTTTTCCTTGCTGGGTGTCTGCCTTGTGCTTCTGTCAGCAAAGTGGTGAACACAATGGAGCAGGTGTTACTGTTTTTCGATAAATCCCAGAAACTGAGGGGGGAGCTGGCACAGGTTACTGAAAGCCTAGTGAGCAGATCGATAGAATATGAGGCAGTATTGTCCGAATCCAGCTGCTTGAAGTGGATCGTGACTGAAGAGATTTTTGATCTCCTGGTCGATCTGTTTGAAGGGCTTTTGAAGTGTTTAGATGCAGTGAGCAGTAATGCTGATGGCTCCTGGAGCAACAGTATATCATTGCATGCTGGCATATTTTCACAGGCTATGAGAGACCCTGGCTTTGTGATTACTCTTGTGTATCTAAAGAAGGCATTTCTTCCGATGAAAGGCTTCTGCCAGGTTTTCAGGAGTGGAACATCTGCTGAGCTCATCAGTGAGATTGCGAGGATGCCTTCACAAACTGCTTTGCTCAGTAACTCGCTGGACAACATTGACTCGATCCATCCTGTTTGGTTTGCGGAAGCTGTTCAGCTGGCAGTGAAGGTGAGCACTGGGCACGTCCGCTTCCCACAGGAGTCCTTCAGCTTTGAATCACCAGAACGTTACTACTGCAAGACGTTAGGCGTTCCTATTCTGACCTCTCTCCTGGGTGAACTCCAGTTCTTTTACTCAGACACTCATTTGGATGCTCTGAAATGCTTGTCTCTGATCCCATCCTGCCATCCAGATGTCACAGAAGAATTCGATATCCCTATTATCCATCACATCGATCTCCCAGAGCCAGACACACTTCAGCAGGATCTTAACAATTGGGTGGGTCTTTGGAAAGGGAAATCCATGGAGGGCGCACTGCCTGCTTCGGTTCCCAACACACTCCTCCACCCCGAGGCCAAGAGCCTTCCCAATGTGTGCACTCTGCTGAAGGTGTTGGCTGTGTTGCCGAGTGTAAGAATGGATACTCTGTCCAGCAAAGATGGCTGGGATTTGATGAGGGCTCGGCTGAGGGCAGCTGTGGGCACCGGCAACAGTCCAGACCTGCTCATGCTTCGTATGCAGTCCAATATGGTTAGAACTCTGGAGGAGATGATCGACCTGTACATCGAAGTGGAACCAGAGAAGCGGACGCTGCTGAGACAGGTGAAAATACAACTGGAAAACCTGAAGGAGGAAAATGgTGATGTTTTGGAGGCCATGGACGATGGATGCCCACCAGGGGCTGAGGATTTAGAAGTGTCCTTATATAACAAGGTTGATCAGTATCCAGAAGAGACGCAGGGGGCTGACGGTAGCGCTGTGGAGCAGAGAGGGATTATGACTTTCTATGGCCCCTCTGTGAGAGAAGAAATCCTGAAGGACCTCTGGGATTCCCAGTTCTTTACGGTCATTACGGAGCAGGTGATGCATGTTGAAGGACATCCCTACGTTCCTCTGTGTGTTCGGTACATGGATAAACTGGACAATCACTATGAGGAGACCCTAGCTCTGATCCCTAGCTACAGTGACCCTAATGTTCTTGCTGATGTCATAGAGACCACTCTATCTGAGAAGTGGGGTCTCAATATGGAGTACTGCAGAGGCCAAGCCTACCTGAGCAGTGGCCTTGCTGGCACCCAGATGAAGGCAGCCTCCTCCATCATTTCAGAAAAGTACCCTCTGGCCTTGCGCACCGCCTGCTCCTCGGTCTCCTTGAATGTCTGGCTGGCCAGATCGTCTCCTGTACTGGACATCTCTCGCAGTGTGGCCACCATAGAGAAGATGTTCTCCTGGTTCATACGCACCCCACTGCTGCAGACCATGTTGGAAGATGCCATTGCTCTGAAGTTCCAGCAGGATGGGGAGAAGGAGCAGGAGCTGAGGGAGAAACTAACGGGAGAGTGGCACAAGTATCACGATGCACCCGAGGCTGTGGTGGATCTTCTCAAAGCGGTCATCCACTGTTTAGCGGAGGTCATCCATAAAAAACCCAATGAAACGCTGAGCCTTGAGGCCCAGCTCTTTTACAGCAAGGTCCGTGATTTTGACTTTGTGTTTACAATCGTAGTACTCAAAAACCTCACGTCTCTTACTCAAAACCTCAGCCAGAGCCTTCTAGGGAATCCCTCTGATGTTTTGTTAGCTGTGAAGCGTTTGCCCGCTGTCTTGGATTCCTTGAATGAAGTGAAACAGAATATTGCTGCCCACCATGAGACCTGGTACAAAGAGGCTTTGGTGTTGGCTATGCAGTTGCAGATCAAAGTGCTTCATCCTGTGCTACAAGGACCGCTAAGCAACCACTACAAAAATGTTGTGAGCATCAAGGCCATAGAGCATGTCATTACCGAAATCACAGAGCTCTTCTCGGACAGAGTCCTCCGTGCCCTGAAGTGTCTGATACTTGTGCCTTACGTCATGTCCAGTGAAGACTTCATTTGCAAGGAGGGAGACGTCACCGGCGTATACAGAGAAGACCTGCCCGACGCCGACTGTCTAGCCAGTGAACTGAAGATGTGGGAGGAAAGGTGGAAGTCCACGGTGGTCGAGCATCTGCCAGCCACCACCCTGGACTCCCTGAAGGTGACTGATATAAGATGCTATTGCAATATTGAAACCCTGCTGAGAGTCCTGGTTGTCTTCCCACTCCTCAGAACACAGAGCAGCTTCAGGGAGGGCCGAATAAGCCTCCAGGAGTACATGCTGATGAGGGAGAGATCTTTCACACAGCTCTTCCCTCTTTAAGAAGTTCTTCCTTATCCTCCTATTCACCGCCACTCGACCGGAGCCTCAGAGTCAGTGACGAGGAACTTCATATACCCTGGGTTAGATCTGGGCTCAGGTTAATTCATACTACTTTTTTCTCCCccattttgtctttgtctttaaGACTTGAAAAtggtttatgtttaaaaatacctCTTCTGATTAAGTTGATGTGTATAGTGTTACTTTTATGTGTTTTTGAGtttaaattttctttatttttagttgaaTAATAATGGACTACCTAGGTCCTTTTGGTTATTAATGGGACCAATTAATTGCCAAAAACAGCCTTATCGGGCTACTGATGTTTGTGTGCCTTACTGGTCTTTGCGTGAATAAAACTGTGGGCCCTGTTCATAAGGGTCagaactgtacattttgtacGGAATGGTTTTGTTGCATTCCGTCACAGCTTTGATAAAGCAATTTAAGAATTTATGAGAGGGCCCTGTATTTCATCCCTTACCAGAAAGGAATGTGTATAATGTGAATCAGGAAAGATATTAGAATTGTGTGCATTAATAgctatacataaaaatacattagcatTTGTTGTGTTTACAAAAGCTCTGCTAAAATGCTAGTCGATATTATTTCCAGGCTGTCGTAAAATAACTGTTTCCTAGGGCACACTATGATATGCTTTGTGAAATAATGTAAGCCTGTTTTACTataccctttttttttttttttttgcttagttAGGGGGTAAGG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15263 lncRNA downstream 199674 13657443 ~ 13659659 (-) True G12373
TU15247 lncRNA downstream 219743 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA downstream 219743 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA downstream 219743 13638697 ~ 13639590 (-) True G12358
TU15249 lncRNA downstream 220183 13627255 ~ 13639150 (-) True G12359
TU15533 lncRNA upstream 546373 14420421 ~ 14427290 (-) False AMCG00016281
TU15536 lncRNA upstream 553577 14427625 ~ 14428817 (-) True G12585
TU15547 lncRNA upstream 557564 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA upstream 557670 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA upstream 557670 14431718 ~ 14436437 (-) False G12594
AMCG00016257 mRNA downstream 19294 13829760 ~ 13840039 (-) True AMCG00016257
AMCG00016252 mRNA downstream 183801 13655038 ~ 13675532 (-) True AMCG00016252
AMCG00016251 mRNA downstream 264182 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016245 mRNA downstream 276667 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016246 mRNA downstream 300522 13545139 ~ 13558811 (-) True AMCG00016246
AMCG00016259 mRNA upstream 687 13874735 ~ 13879998 (-) True AMCG00016259
AMCG00016262 mRNA upstream 38874 13912922 ~ 13921956 (-) True AMCG00016262
AMCG00016263 mRNA upstream 62575 13936623 ~ 13936850 (-) True AMCG00016263
AMCG00016267 mRNA upstream 82719 13956767 ~ 13970852 (-) True AMCG00016267
AMCG00016266 mRNA upstream 138648 14012696 ~ 14021948 (-) True AMCG00016266
TU15220 other downstream 300149 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 988773 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 988773 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 996463 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1530300 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 916155 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 2984493 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2984493 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2984493 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 5217191 19091239 ~ 19105381 (-) True G13367

Expression Profile