RNA id: AMCG00016259


Basic Information

Item Value
RNA id AMCG00016259
length 3770
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00016259
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13874735 ~ 13879998 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAATAGCGTGGGGGGAGAAAATACAACATTGAAATGTATGGGTCCCTGCTGGCAATTGAACGGGGGGTAGCGGTGCATTGTGGGACGGAAGAGGACCGAGAGGCAATCCCGCTTTGAATCCTCCAGGCCACAGAAAGCACTGTAGCGCACCTTTTTGGAGACGGCTAATAATTTCTAAATATagaacacataaataaattaccacCATTAAACTAAAGTTTGCGCTTGGAGAAAACCCCTTATGTGAAACAACTGGAAGTGAATTGTGCACATTTATGAATCATGCCGAATTTTTGCGCCGCCCCGAATTGCACCAGGAAAAGCACTCAGTCAGACCTGGCTTTCTTCAGATTTCCCCGGGACCCGGCAAGATGCAGACTCTGGGTGGAAAACTGCCGGCGAGCAGATCTGGAAGACAAAACATCAGACCAGCTGAATAAACACTACAGACTGTGTGCCAAACACTTTGAGGCTTCAATGATATGTAAAAGTAGTCCTTACAGAACGGTGCTGAAAGACAGTGCAGTGCCAACAATATTTGACTTAACAAGTCACCTCAATAACCCACACAGCCGACACCGCAAGCGAATAAAAGAGTTGACTGAAGAAGAATTGAGAAAGATGAAAGAAAGGAGACtcgAAGCTTCAGTTGAACAagtggaaacaaacaaagaaaacgaGCCGGCCGAGGGCCCCGACAGTAACGACAACAATGACGATACACCACCACTCACCCAAGAGGAGAAGGAAGTCAGAGATTATCTAAAATCTTTATTCGAAATCATAGTTGTGATCGGCAAGCAGAACATACCCTTGAACGGACACACACAAGAAGAGGAACAGAGCGAGTCTTTCACCCCCACCAATTTCCAGGCCTTGCTGGAGTACCGGATTAATGCGGGGGACGAGGTTCTGCGCAAGAGGTTTGAGATGGACGCTGTGAACGTTGAGTATTGCCCCTCTCTGCAGCAGAAGCAAATGCTCGAGGTCTGCGAGAGCTGCATCCgtgaggagctgctgcaggagatCAGGGAATGCCGCTTCTTCTCGCTGGTCACGGACAATGTGGTGGAAATCAGCGGGGACTACCACCTCCCCTTGTTCTTGCGCTTCGTGGACCAGTCCAACTGCCTGCGGGAGGAGTTCATTGGGTTCCTGCCCTGTGAGGGAGACGAGGAAGCCCTGACTGAAAGACTCCTGTCTGAAATTACTGGGAAATGGGGCTTGAACATGGAGCACTGCCGAGGCCAAGCCCACGTCAGCTGTGGAGTGTTTGCAAGCAAGATGAAATCGGTGGCTTCCAAGCTGATGGAAAAGTATCCCATGGCAGTTTATACTCCTTGCTCCACTTGTGCTCTGAACATTTTTCTTGCAAATTCGTTGCCCTTTACTGGGGTGCAGGTGGTGATGTCCACTTTGAAAAAGATTGACGCCTTCTTCAATAAATCACCTCTACTAAAGGCTGAACTTGAGCATGCCATTTCGATCTTCTACCAGAGCAATCAGGAAAAGGCCAGTGAACTTAAAGAGGTTTGCCGCAGCAGCTGGACAGAGAGACACGATGCTTTCGAGTTAGCAGTGTACCTCTTAGAGTCGCTCCTCTTATGCATGGATAGCATTCACGATAATGAAGATTTGAAGTGGAATGATCAAATTACCTTTGAAGCGTACATGATTTCTGAGACATTAGCAGACTTTGAGTTTGTAGTCACCCTTGTGGTCTTGAAAAATGCGCTGTCCTTCACTAGGGCCTTTGGGAAGAACCTGCAAGGGCAGACCCTGGATGTGTTTTTCGCTGCCAGCAGTTTAACTGCAGTCTTGCACTCCCTCAATGAGGTCATGGATAACATCGAGGTGTACCACGAGTTCTGGTTTGAGGAGGCCATCAATTTGGCCGCTACGATGGAAATCCCAGTGAAGGTGCCCCGATTGTACCTCAGGAAGCAACGAGCAGAATACGGCTTAGAAGTTCAGCctgaaagttattttaaagagtTCCTAAGCATTCCAGTTGTGGCACAAGTTATACAAGAACTCAAGGATGTATTTTCAGAAAACCATTTGAAAGCTCTAAAATGCCTGTCGCTTGTGCCGTCTGTAATGGGGCAACTGAAGTTCAACACATCGGAGGAAAACAATGCAGACATCTACAGGAACGACCTTCCAAATCCAGACACGCTTCCTGCCGAACTCCACTGCTGGAGAATTAAGTGGAAACACAGAAGTAAGGAGATCAGTCTGCCTTCCACCATCTATGACACCCTGCAGCTGTCAGAAGTGAAGTTCTTCCCCAACGTGTACTCCTTCCTCAAAGTGCTGTGCACCCTGCCGGTGTTAAAGCTGGAGAACTCCAAGTACGGAATCGCACGGAAGCGCCTGCAGGCCTACCTTACTGACACGCCTGTCAACCACCGGTCCAAGAGCCTGGCCCTGCTCAACATCAACTATGATGTTAAGCATGATTTAGACTTCATGGTTGATACCTATATTAAACTTTACCCAGAAAAGGAGGAAGAGTGACACAAAACATGGAAGATTTTAGCACTGTCGTCAATTAcgcatgttgttttttgtttagtttttttgctttacTTTCTTAAGTaattgttctgttattttattttaaaactgagaaAACTAATATATTACAGTCAGACGATATAATTTAAAGTCTTGAACTTTCTAGATTAAACAGTGTGTTTTTCCATCGCTTTGTAGTGCATCCTTTTGTACAggttatgctttttttttttactcttgtagtacaaaaattaaaatacgaATGGAGTGGAGCATATTCAGCTGTAGATATAGTTGCTTCGGTCCTACAATTGTGTGAGAACATGGGAACCAATTAATTTTTACATTGagatatttttatgtttgtgtattcagtttttttattttaatgttagtATGGCCTACATCTCAACTGGACCAACCcctcaattaaatgtaatagttATCATATGCTGAAAtagtttaaactgttttaattttcacataTGGAAGCTGATTTTATAACTATACATTTAAGTTTGTAGATGACaaatctttaaacaaaatgatgatACTCTTTGATAAGTGTATCCATTTCCTGGATAAACAGGTTGATAATGGCTGTGTGTTTTCCTATCATATTCTTcctacaagaacaaaaaacatttaacttacAAATGTgggtttaaaaattaaatgcagtgtAAAGATGCACACTATATACTTAATACTGGTGAAATACTTAAGTCTGTAAAAGCTAATGGATCCATTCTGCTTTGTGTTCTACCTAGATTGGAATAATTAGATGTATCATTAAATGACAAATTGTTGCGAAACAAAGGTTGTATTGAGAGTGGTATGTTTAGCTTATTTGCTGATAGAAAACAGTGCAACAACCATATGCAACCAGTTCATCGTGGAAATGGgaagtttttgtgtttgtacttCAAAGAACATCAGATCCATAAATTCACCcacatgaattaaaaacatcaatttgAACGATTAACtgaatgatatatataaaaataaataaaagttgtatgATGTAACATTGAACATTGTACTCTGTgctaaataaagtttttttgttttgtttttaatccaccattgtgttgtttttaggAGATTTATATTTCCGCAAACTTACTGGACATTTTTATCACCATGTTATTCAAGAAAGTGATTAATAAAAACGTAATTATATTCACAATGTACAGTGCGACTcatgtttgcatttgttgtATTTAGACCTATAGGTATTGTGCA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15263 lncRNA downstream 215076 13657443 ~ 13659659 (-) True G12373
TU15247 lncRNA downstream 235145 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA downstream 235145 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA downstream 235145 13638697 ~ 13639590 (-) True G12358
TU15249 lncRNA downstream 235585 13627255 ~ 13639150 (-) True G12359
TU15533 lncRNA upstream 540423 14420421 ~ 14427290 (-) False AMCG00016281
TU15536 lncRNA upstream 547627 14427625 ~ 14428817 (-) True G12585
TU15547 lncRNA upstream 551614 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA upstream 551720 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA upstream 551720 14431718 ~ 14436437 (-) False G12594
AMCG00016258 mRNA downstream 687 13859333 ~ 13874048 (-) True AMCG00016258
AMCG00016257 mRNA downstream 34696 13829760 ~ 13840039 (-) True AMCG00016257
AMCG00016252 mRNA downstream 199203 13655038 ~ 13675532 (-) True AMCG00016252
AMCG00016251 mRNA downstream 279584 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016245 mRNA downstream 292069 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016262 mRNA upstream 32924 13912922 ~ 13921956 (-) True AMCG00016262
AMCG00016263 mRNA upstream 56625 13936623 ~ 13936850 (-) True AMCG00016263
AMCG00016267 mRNA upstream 76769 13956767 ~ 13970852 (-) True AMCG00016267
AMCG00016266 mRNA upstream 132698 14012696 ~ 14021948 (-) True AMCG00016266
AMCG00016268 mRNA upstream 206956 14086954 ~ 14132654 (-) True AMCG00016268
TU15220 other downstream 315551 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 1004175 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 1004175 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 1011865 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1545702 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 910205 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 2978543 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2978543 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2978543 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 5211241 19091239 ~ 19105381 (-) True G13367

Expression Profile