RNA id: AMCG00016261


Basic Information

Item Value
RNA id AMCG00016261
length 1669
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00016261
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13949907 ~ 13954292 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGGGGTTTGGAAACTTGGGCGAGACCCATGTAGATCAGCGGAAGGAGGGGGAACTGTGCTCAGGGTCCTGCCACGCAGAGCAGGTCCTGCAAATCCTGAACTCGTACCGGCAGAGCGGCACCTTCACCGATGTGGTCCTGCAGGTGGGGGGCAGCGAGTTCCCCTGCCACCGCGCCACACTGTCCGCCAGCAGCCTTTACTTTCGCACCATGTTCCACAGTCAGCTGCTGGAGAGCCGCCAGTCCTTGGTGGTGCTGCGGGACATCTCGGCCACCACCATGGAGAACCTGCTGAACTTCATGTACGAGGGCAAGGTGGACATCCACGAGGAAAACGTGGAGAGTGTCTTCAGGGCAGCCGACCTGCTGGGGGTCTCTGTGCTCAGCAAGGCCTGTGTCCGCTTCCTGGAGAAGCAGGTCGACCACTCCAACTGCCTGGGCATCATGAACTTTGCCAGCTCCTATTTCATTCGCCCTTTGACCGAGAAGTGTCAGAAGCTTGTCTTTGAGGACTTTGTGAAGGTCTACAAGCACGAGGAGTTCCTCACACTGTCCAAGGAGCAGATGGTGGAGCTGCTGTCCAGCGAGGAGCTGCTGGTGGAGCGCGAAGAGGTGCTGGTCGAGGCTGTGCTGAAGTGGGTTCACCATGATCCCAGCGGCAGGAAGGCGGCGCTGAGGGACCTGCTGGAGCTAGTCCACCTGCCACTGGTGGACCCTGCCTTTTTCCTCAGCACTGTGGAAACCGATGTCCTCGTCCAGGACTGCAAGGACTGCCGGCCTTTGCTGCTGGAGGCCAGGAAGTACCAAGTCTTCGGAAATGAAGAGAACTCCGCCACAACCCGGCCCAGAAGGTCAATGGGACGAGTGGAGATGATCGTAGTGATTGGAGGCTGCGATAAGAACAGCTATGCAAAGCTGTCCTTCACTGAGAAGCTCAACACTCACACTAAGGAGTGGCTCCCCTCAGCGTCGATCCCAGGATACTCAAAGTCCGAATTTGCTGCCTGTGGTCAGTTGAACAGCAGTGACGTGTGGCGACACATCTCTCAGCTGGACACTTGGGTTCGTGTTGCCCCTCTGAACAAAGGCAGGTGGCGGCACAAGATGGCAGCCCTCCGCGGGAagCTGTACGCGGTTGGAGGCTTCAACGGCATGGAGAGGCTGCTCAGCGTGGAGAGCTACAGCCCCTTTGATAACCATTGGCAGCCGGTGGCCCCTCTGCTGCTGCCTGTGAGCTCGGCCGCTGTAGCAGCCTGTGGCGGGAAGCTGTACGTCATCGGTGGGGCAGTGCAGTGCTATGACCCCGTGGAAGACAAGTGGAGCTACATGGCCCCTTGCCCGTTCACTCAGCGATGCATTAACGCTGCAGCCTTCCATGACACCATCTATGTGGTTGGAGGCCTCATGGACAAGATGTACAGCTTCAGCCCGCAGAAAAACACCTGGAGTGAAGTTGGTGTCTTGCCTAGCCCAATTGAGAGCTGTGGTTTGACTGCGTGTGACGGCAAGATCTACATTCTTGGCGGGCGAAATGAATACGGCATCGGCACCGACAGGATCTACGTCTTTGATCCTAAAACATCCGCGCTGGAGGAGGAGCCGCCCATGACCCGCTGCGTGAGCTACCACGGATGCGTCACTGTGGTCCAGCGCCAAACCCCAAAGCCC

Function

GO: NA

KEGG:

id description
K10461 KLHL24_35; kelch-like protein 24/35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15299 lncRNA upstream 119020 13829734 ~ 13830887 (+) True G12406
TU15258 lncRNA upstream 290248 13657393 ~ 13659659 (+) True G12368
TU15231 lncRNA upstream 310319 13638302 ~ 13639588 (+) False G12347
TU15232 lncRNA upstream 310757 13638302 ~ 13639150 (+) True G12347
TU15215 lncRNA upstream 398049 13551594 ~ 13551858 (+) True G12331
TU15406 lncRNA downstream 228313 14182605 ~ 14184686 (+) True G12487
TU15409 lncRNA downstream 240643 14194935 ~ 14196634 (+) True G12489
TU15493 lncRNA downstream 429613 14383905 ~ 14384657 (+) True G12549
TU15511 lncRNA downstream 442957 14397249 ~ 14398414 (+) True G12566
TU15541 lncRNA downstream 494520 14448812 ~ 14449212 (+) True G12589
AMCG00016260 mRNA upstream 54734 13880806 ~ 13895173 (+) True AMCG00016260
AMCG00016253 mRNA upstream 166279 13776522 ~ 13783628 (+) True AMCG00016253
AMCG00016254 mRNA upstream 207729 13726371 ~ 13742178 (+) True AMCG00016254
AMCG00016255 mRNA upstream 235216 13707214 ~ 13714691 (+) True AMCG00016255
AMCG00016256 mRNA upstream 244024 13676994 ~ 13705883 (+) True AMCG00016256
AMCG00016264 mRNA downstream 22488 13976780 ~ 13980445 (+) True AMCG00016264
AMCG00016265 mRNA downstream 114989 14069281 ~ 14084493 (+) True AMCG00016265
AMCG00016269 mRNA downstream 207201 14161493 ~ 14162428 (+) True AMCG00016269
AMCG00016270 mRNA downstream 222500 14176792 ~ 14177130 (+) True AMCG00016270
AMCG00016273 mRNA downstream 269596 14223888 ~ 14233628 (+) True AMCG00016273
TU15237 other upstream 312906 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 318110 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 322196 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 1168043 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 2078172 11868825 ~ 11871735 (+) True G11921
TU15538 other downstream 483479 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 2530063 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 2530063 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 2530063 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 3162501 17116793 ~ 17121932 (+) True G13012

Expression Profile