RNA id: AMCG00016278


Basic Information

Item Value
RNA id AMCG00016278
length 7891
RNA type mRNA
GC content 0.50
exon number 21
gene id AMCG00016278
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14348972 ~ 14383679 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGACTCCTCCTCTTCTCTACAGCTGGCAGGCGTCTGCGAAAGGAAACGCACACAATGGTGTCAGGCTGCCAGTCGGATTACACCGATTGCATTCATTTCCTAACACACTCCTCGCCCCCCAAAAACACCGTTAAAAAGTTGTAGCATTGGATACAGCCGCTCTCATGTAACCCGGTCTTTTCGGCGACGACCATGTCCAGTATGAAGAGGCAGAGCTCCTGGCAGGAGGACATGGTTAAAAACTTCTCCCGATTCTTTTCCAGGACCAGGTCCCAGGAGCCAGCAAAGCCAGCGGACAGTCACAGTGTAGATGATAAAGAAAATGAGATCAACAGTCCTTACAGTGAGAACAAGGAGGAACCACTGTCCAAGCAGCTGGTCATCGATTTATCAGAGGCTTTCCAAGGCACGGAAGAAAAGGACAATCTGGCACAGGATGCAGTGGGGCTTCCCCTTCAGGAGCCAACCCGTGACCCTCCTCCCAGCCAGCCCCCCTGCGCTGAGGCGAGCAGAGAGGTCGACGATCCGCCGCCTCCTTTAGATGCCTTCCTTAGAAAGCTGGGCAGCCTGTTTCACTTGCCGTCCAAGTCTGACTCGCAGAATCCCAAGGGCGCCGAGTGGCAGGGCGCCAGGGACACGGGAGATGCCGCACCTGACCTGAGAGCCATGGCATTGGAGGCAGGGCAGGGCGGACCGCATGTGGAGCTGCTGGGAGAGACAGACTGCCGGTGTCAGGAGGGGctggagcgagagagagggagagaggcgggggagcagggagaggagagggaggggagacaGCAGCATCAACCACAAACTAATGAGGAGGCAGCGGCTCCTCAGGACACAGCGCTTCCTTCTGATGAACACCGCAGCACCGATTCACACACGGGGCAACACCTAAACTCCAGTGAAGACCGTTATGTAACAACTGATGGCAGCTCTTCGGGAGATCAAAACGGAAGCCAAGACTCGGTTGAGCAATGCAGATTGGCGTTGTCTTGTCCTCCTGCTGTCACCTATGGGACATACCGAGGCATGCGGACAATGAAGAAGATTGAGAAACATCAGTCCCAGGTGGATTCTCCTATACCTGAGGGAGGTGAAGAGGCCCAGCCCAGCAGCAGTAGGGATTGTTTGGCCGCAGAAGGGGAAAGGGGCATCCCCAAGCCTGGACCACAGAATAAATTAGAGACCATTAGGGCTCAGGAGACTTGTGACCCTGGGGCAGTGTCTACAACTCAGGGGACAGAATTACACAGCCATGACCAAGCTTCAACCTCACTGGTGGGCCATGATGCCTCTTGTGATCAGAAAGCAGTACAGAGCTCTGAAAAGGACTTGGATGTTTCCAGGCCTCCAAGATCAAGCGGTATGGGCAGTGTCGCTCCACTATCGACTGCACTCTcgtcagaaaacagtgctgcgCGATGTGCCTTGGTGAGTTCAGAGAAGCCAGACTTGAGTATTATAGGAAGCCTGGCCATGGGATCCAATCCAGGGCTTGTTTCAGCCTCCCTGGTGTCTGTTGAGAAGGATACTCTGGGTAAGCTGCTGCTAGCTCCTAATGAGGCACAGAGTGGCGCGGCAGATTACTCGGCAGAGAAAACAGCAGGAGCGCCGCCTGAGATTGTCAACGAGGAAACGAAAGGATCGGCTGAACAAGCAGAAATTCAATCCCCGATCGAGGGCTTGGGGAGGTCACTTTTAGAAGGCAGCCATGTGCCACTATGCAGAGCTGAAGGGGCCCAGGGAATTGAACACATACACCGGCCTTCCGTCTGCAGCGAGGCTGTGGCTTCTCCTCGTTACAAGAAAAACCTGAAGCCTGCTGGCACTCAGTATTGTGTTTCAATGTCAGGATCACCGGAAACTGAGCACAAAGATAACCTCCTGGCAGCTGAGGAGAATGCCAGAGTGAGCATGTCCATTGAAACTGCCACGCAACTACACTGTGGCGAAAGAGAAAGTGAAAGTGCTCAGATCCTGACTGACGGGGCTGGTCTGGAGGAAATGGAAAGTTCCCAATATGCCTTGCAATCTCAGTCGAAAGAAATAGTTGATAACATTCTGAGAAATGCTCTGGCGGCCTTGCATAAGATAGAGGCATCTGAGCAGGAGTGTCTACCAAGTGAGGTGAGGAGCCCAGGCCTTGCTTCTGGAGTTACCGAAAATGCTGACGGACACCTCCATATACACGATAATTGGACTGACAAGGGGTTTGAAAGCAACCCCTCACCTGAAACCACCCAGCAGAGTCTTATCCCAGACATAACCCAGGCTGATAGGGACAGGTCTGCTCTGTCTTCAGGTTATGAATCCTTCACTGGTTCGGACACGGACATTGGAAATATTCCTGGGGTTGTTTGTGACCAAAGTTCTCGGGATACTCTCACTGACATTTCAGATCAGAGTCAGGGGACGCCTTCCAGCCCAGCAGGAAGGCCGGGCCAGGTTTATCCTTCAAAAAGCAGCTGTTCTCATTCAGTTGACAGCAGTGGGTATCACGACAGTTTAACAGACTTGCAGGTTTACAATAATGTTGAACCTATCGGCACAGACAATATCGGCAGTCCGAGGAAAGGATTAATCGGTTCAAGTGGAGTCCTGTTACAAACACAAAGCCCTGCCATAGAGTACGATGACAAAACTCCAAGAGGGAATAGCACAATGGCAAATCAGACAGAATGTGTCTCTGTACAAAGTAAAAAAGATAACATGCAAATAGACCAAGCAGTGATAGGAGATGATTGTAATGGGGATCTGTCAATGAAAGCAACTGAAATAATCAATGAGGCACTGCGTTTAGCCAAAGCCAAGGTTTCAAGCAATCAAACTTGTAAGGATGATGAAAGCATCACATCTCAACAGTTggtgaaagaaaacattgacGATATAAATGTACCAATTAATGTGAAAAAGACTGTTCAGCTTAAGCAAGAACAGGAAACCACTATATCTTCTGAAGTTGTAGAGAATGAGCCTCATGGCAGACAGCCCCAGGATATGACCCAGTTAACAAACCCTGTCCATCCCAGCCCAGTTTTAATAGCCAAAGTCAATAACATTGTGGAACAAGTCATTCCATCAAACATACAAGTTTTACACAATTCTGAGGAACATGTAATCAGAAATGGAGCCCTAGACAATGACCTGACAAAGGAGTCTGCCAGCAAGAGCAATTCCCATGGAACCTTCTCTAAAACAACACTGCATAACATCACATGCCAGACAGGACAAAAAGCACTGAGCGAACCGCAAGAAATCTGTGACACACGTGGGGCCGATAATCAAAGCTTCCTTTTAGTTCAGAGTTATTTAGCTGCAGTGATTGAGGATGAGTCAGACTCAGATGGTGATGATAACTGCCAGAACACCCAGCGGGGATATATGGACACATCCAGCCAAGGGGAAAAACGTAAGGGCTTGGACAGTGATGAGAAGCTTGCAAGACGTGGAAAACACCCAACACTGCACTCTCGTGAAGGGGGCAGGCAGTCAGACTGTGCAGAGGGTACACAACACCGCAAACTGCCACCAGAGAAGAGGGGGGACTCAGTGATTCCTCACAACACAGCCGAAGCCGGCTCGAATGATGACATGAACAAGACAACCGGTAATAAACTGTGCGGTAAAAAGGCACCTCCCGATATATTTCTCAGCACGGCCAGAGGGCAGCCATTGCAGCTCCACCTGCACAGGTTTAATGACCAAGACAGCCATGAAAGTGAAGGTGGCTTTGACAGTATagacgaggaggaggaagcaGACACAGTGTTTATAAACGATTCAGGCACGATGCTCAGCCCCACGTTCCGCAGAGGAAAGGCTTACCCCTTCTCTTTGTCCCCAATATACGAGGAAGAGAGTTTCCGGGAGGAGGTGGCCATGGAGAACCTTCCAGACCAAAGCTTCATGGAGGAGGATTCGAGGACGGAGGAGCAGCAAGCTTCCTCCATCCTCTCTCTTTTGCAGTCTGTCAGTGAACGTCTGCAGCTCAGTTCCTTCTCCGACCCACACCAGGACTTCTCTGAGGAGCCCTCTGCCCCTCTGCAGGATTGTCTCTGGGGTCTCTCATTGGAGAGAGACTCGGAGGACACACAGACAATCAGTGAAGAGCAGAGTGGACTCCCCACCCAGCCATGTGAAACCCCAGAGGAAATGTCAAGTCATGGGACTGCTATGGACAAGGTTGATTTGTTCAGCTCATCCGAACCATGTGCCAGTGAAACGCTCCAAGTATCTCTGCCCCAGGAGGAACCAGGAAGCCCTACGACTCTGTCCAATCCTAAACCCACCACAGAATCTCCATTCTACCAGTATTTGATGTCTGCGAGGTCCTTACAGCCAGAAAGGCACAACCTAAAAGTCCAGCCACGTAGAACATTATTACAATTGGAAAGAAGTGCACCTCCTTCAGTGACAGAAGCTACAGAAACCAGGGCCACATCCAGGAGACTGCCTGATAGAAACTTGAAAGCCAACCCGAGGCCTGTGAAGATGATCATCTTTGAGGGTGATGTATTCTCTGGGAAAAAGCACGAGATTCAGACTGATATTGAAGATGCCACTGTGATGTTACTTCCTGCAGGCGTGTCCATCAGGGTCGTCAGAGGATGCTGGCTGTTATATGCGGAGCCTGGGTATCGGGGTCCCTGTGTGCTGCTGGAGGAGGGGGATACGGTAATGGAGAGGAGCACAACCATTCTCTCCATTGGCTCCATCAGAAGAGCAGTACAGGATCATAGCATTCCTGAAATTGAGTTTCATCCTGTGGGAAAGAAGAAAGGAGCCCCAAAGTGCTTCCAAGGAGAAGTTGAGGACTTTGAAAAGCACGGAGGGGGGGCTGAGCTATCCTCTTTCACTGTCAAGGCAGGATGCTGGCTTGCCTATGACAAACCCAATTTTGATGGAAATTACACTGTGCTGGAAGCGAACAGCCCTCGTACACCAGATGCCTCCAAACCTGAAGTCAAATCACTGCGCCCTCTCAGAATGGGTGGACTTAAAGTACAGAACCCTATGGATCCTAGgGTGGTTGTGTATGAGAACGCCTCCTTCGGCGGGAGATCCAGAGAGCTCGGCGATCACACCCCCAGCCTGGCTGCTCTGAGGGGACTTCAGGGAGTGGGGTCGCTCCGGGTCACTGGCGGCATATGGGTGGCCTACTCTGATGAAGGCTACAAAGGAAATCAGTATTTGCTAGAAGAGGGAGACTATTCAAACTGGCAGGCATGGGGCGGATCAGAAAAATCTCTGCTCTCGTTGCGCTACATCCAGGCCGAGCTCATAGAGCCTTCAGTATCACTGATTAAAGGACTGCACTCAGCAAACGCCGAGGAAAGCGATATTTCTGACCTTGACATGCCAGACCTGGACAGTGTAGGCTGTGCTGGAGGAGTCGACTCCATCCATGTGAAGAATGGCGTATGGGTGGCGTACAGTCAGAAGTTCTTCTGTGGGAAGCAGTATGTCCTGGAGAAGGGGGTATACAAGAGTCTCCTGGACTGGGGCGGCTCAGACAATGCCATCAGATCCATCCGGCCCATCCGACTGCTCAGAGCTTACAGTGAGCCTCATTACCACGGCAGCAGTGAGGAGTTCGAGGCGCAGGTGCTGGATTGCAGTCTGTCAGTTCCCAAGTCGTTCAGGGTGATCCGAGGATGCTGGCTGCTCTTTAATGATAAAGGCTTTGCTGGAAACCAATTTGTGCTGGAAGAAGGCCTTTACCCGGATCTCACTTCTTGTGGCTGCGTGGCAACATCCATTAAATCCCTGAAGCCCATTCCCTATAGCTTCTCGGACGCCTCTGTCAGCCTCTTTTCTCTGGATTCATTCGAAGGCCAAGAGATGGTCATTCAGGATCCCATGGAGACTGTCAACAACTTCTTCACCCAATCAATCCGAGTCAACAGTGGACGGTGGGTTGTGTATGAATATGCCAACTTCAAGGGACGGCAGATGCTCCTGAATCCTGAAGAGTTTGGCTGCTGGAGTGACTACAGTGGGTGGAAGACCATTGGCTCTCTACAGCCCTTGGGAAAGCCTAAGATGTACATCCGGCTGAGAAACCGAGCCCTTGGCACCCTACTGACCAGTGAGGCTGTGATGGAGGAATCCACTCCAGCCATGGTCTTCCTCAGCCCTGCAGTGGGGACACACACCCAGCTGTGGAGCGTCCGCCAGGGTCTTCTCAGGTGCAAGGCAAACAAGGCATGTTTGGCGGTGATTGGAGGGAAGGACGCTGCGGGGGGGCGCGTAGCACTGTGGCCGGAGCACGGTCGCGCCCATCAGAGGTGGCGGGTCAACGAGAACGGGACGATATCCTCACACCTCAACCACCACCTTGTCTTGGACCTCCGAGGTGGAAAAGGCTATGACAAGGATCACCTGGTTGTTAATGAGTTCACCGCAGAACACCCCACACAGTACTGGGACATTGAAATCGTGTAGAAGGGGATTTTCGGGAGCTGGCGCGGCTTGGTAGGGATACCTCGGGGGTCCAGCGATGAGAGGAATTCACTCAGTGCTGTTCAGAGGGAGCAAGGCCACTAAGTCCACCTGCCTGGGGCACCGGGTCACAGATTGGTAAAGTAGAGTTTCGTATGACACACAAGTGAATGATGGGAACCAGTGACCGGCTGCCCATCAGTGCACTGGGAGCTATGAGCCACAAAGACCCCTTTGAAAAACACTCATCTCTTTTCCTATCTAATCTCAGGTTGCAGGAATAATACATCGGTGGCCATTTTATGACATGTTCAATATAATTGTAAAGTACCAGTTAATAAATGCAAGGGTCTTGAGCACTTCAGTGAATATTACGAAGGTGACCATAAAAACAGACCTGATGGTTTCATCTTCAGCAGTTCAGCTCTAGATTGATAAACTACActcacctggtggcccattttttttttacatcactgACCAAAAGCTGAAGGACATGGAGACCAACTTCCCCTCCCAGCCCTGACGTGCACAGTCTCTCGAGCAGAACACCCCCAGCATTTACCTTCAGCCGTCTTGTTAGTATTATCTACCAGGACCTTTCACCAGACCTCCAAAATAAGCGGCAGTGCAAAAAGGATTTTATATTTAGTGccgttttgtgttttttaaaccgATGAATTATGCTCTTCAACTGCAGTAGCAAATTTGCACTATGGAAAAGACTTGcgatttgcatttgaaaaagctTCCTGAAACAGCTAGATACATCTTTCCCCGAGTTTGTCCGGCGAACAATCGCTTATTGTGGAACTACCTGGCAGCTCCTAGTGCATCTCAGGGGTACTGTGTAAAAAATGGGTTGTGATTTATAGCTATTATGAGTCCCTCTCAATGACGGAGATAAAAGCCGTTCCTATTAGCTACTGCAGTACTTGGAAAAACACCACATTTCCCACACTTCCTGCTGTTAGACCACTGCAGCCTTTTTTTTGCTAAACAAATGGTGTTCAAGTGTGCTttctgaaaaatgcaaaaaaagggTCATTTCACTGGatataaaaccacaaaatataACGTTCAGCAATAGATGTGAATATTTCCTGTGACATGTCTGTATATTCCTGAAATGCTTATGTATAGTATTGCAAgctgttaatgttttatgtcctttatataatttagaactttttttaagtattaaatgTAGAAGTTTCATGTAattttgcataaatatttgaattccaAACAAGTGTTTtgaccacagttgttttctgccTGAGACCTGTAATTAGTACAAGCCACCATAACTGTATATCAGTGTTATCTATGCTGTATGTGTGGAATATAGCCTTATCAAATGTGTACATAGAATGCAAATAGACttgtgtaaaaatgtgtattcgtttttaaaaaataaatatatattttacttgcaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15409 lncRNA upstream 152338 14194935 ~ 14196634 (+) True G12489
TU15406 lncRNA upstream 164286 14182605 ~ 14184686 (+) True G12487
TU15299 lncRNA upstream 518085 13829734 ~ 13830887 (+) True G12406
TU15258 lncRNA upstream 689313 13657393 ~ 13659659 (+) True G12368
TU15232 lncRNA upstream 709822 13638302 ~ 13639150 (+) True G12347
TU15493 lncRNA downstream 226 14383905 ~ 14384657 (+) True G12549
TU15511 lncRNA downstream 13570 14397249 ~ 14398414 (+) True G12566
TU15541 lncRNA downstream 65133 14448812 ~ 14449212 (+) True G12589
TU15543 lncRNA downstream 67831 14451510 ~ 14451754 (+) True G12591
TU15565 lncRNA downstream 192908 14576587 ~ 14615709 (+) False G12605
AMCG00016279 mRNA upstream 50193 14296362 ~ 14298779 (+) True AMCG00016279
AMCG00016271 mRNA upstream 66382 14270317 ~ 14282590 (+) True AMCG00016271
AMCG00016272 mRNA upstream 84899 14258609 ~ 14264073 (+) True AMCG00016272
AMCG00016273 mRNA upstream 115344 14223888 ~ 14233628 (+) True AMCG00016273
AMCG00016270 mRNA upstream 171842 14176792 ~ 14177130 (+) True AMCG00016270
AMCG00016285 mRNA downstream 118455 14502134 ~ 14503691 (+) True AMCG00016285
AMCG00016286 mRNA downstream 156762 14540441 ~ 14575549 (+) True AMCG00016286
AMCG00016288 mRNA downstream 361637 14745316 ~ 14782036 (+) True AMCG00016288
AMCG00016292 mRNA downstream 434196 14817875 ~ 14827375 (+) True AMCG00016292
AMCG00016290 mRNA downstream 447048 14830727 ~ 14843857 (+) True AMCG00016290
TU15237 other upstream 711971 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 717175 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 721261 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 1567108 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 2477237 11868825 ~ 11871735 (+) True G11921
TU15538 other downstream 54092 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 2100676 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 2100676 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 2100676 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2733114 17116793 ~ 17121932 (+) True G13012

Expression Profile