RNA id: AMCG00016285


Basic Information

Item Value
RNA id AMCG00016285
length 402
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00016285
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14502134 ~ 14503691 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAACTGCACTCAGTGGAAGAAACCCCGGTGGTCGAAAAGGCCGGATTCTGGGAATCATTGATGCCATCCAGGATGCAGTTGGTCCCCCGAAGCAAGCTGCCGCCGATCGCAGGACGGTGGAGAAGACCTGGAAACTTATGGACAAAGTGGTAAGACTGTGCCAGAACCCCAGACTGCAGCTGAAGAACAGCCCCCCATACATCTTGGATATCTTACCTGACACGTATCAACACTTGCGGCTAATACTCTGTAAATATGAGGAGTGTCAGAGACTGACACAATTGAGTGAGAATGAGTATTTTAAGATCTACATTGACAGTCTGATGAAGAAATCGAAAAGGGCTATTCGTCTCTTTAAGGAGGGCAAGGAGAGGATGTATGAGGAACAGTCACAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15543 lncRNA upstream 50380 14451510 ~ 14451754 (+) True G12591
TU15541 lncRNA upstream 52922 14448812 ~ 14449212 (+) True G12589
TU15511 lncRNA upstream 103720 14397249 ~ 14398414 (+) True G12566
TU15493 lncRNA upstream 117477 14383905 ~ 14384657 (+) True G12549
TU15409 lncRNA upstream 305500 14194935 ~ 14196634 (+) True G12489
TU15565 lncRNA downstream 72896 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA downstream 72896 14576587 ~ 14581329 (+) True G12605
TU15607 lncRNA downstream 276621 14780312 ~ 14783535 (+) False AMCG00016288
TU15728 lncRNA downstream 960386 15464077 ~ 15464312 (+) True G12712
TU15803 lncRNA downstream 1237495 15741186 ~ 15743647 (+) True G12763
AMCG00016278 mRNA upstream 118455 14348972 ~ 14383679 (+) True AMCG00016278
AMCG00016279 mRNA upstream 203355 14296362 ~ 14298779 (+) True AMCG00016279
AMCG00016271 mRNA upstream 219544 14270317 ~ 14282590 (+) True AMCG00016271
AMCG00016272 mRNA upstream 238061 14258609 ~ 14264073 (+) True AMCG00016272
AMCG00016273 mRNA upstream 268506 14223888 ~ 14233628 (+) True AMCG00016273
AMCG00016286 mRNA downstream 36750 14540441 ~ 14575549 (+) True AMCG00016286
AMCG00016288 mRNA downstream 241625 14745316 ~ 14782036 (+) True AMCG00016288
AMCG00016292 mRNA downstream 314184 14817875 ~ 14827375 (+) True AMCG00016292
AMCG00016290 mRNA downstream 327036 14830727 ~ 14843857 (+) True AMCG00016290
AMCG00016291 mRNA downstream 341145 14844836 ~ 14845843 (+) True AMCG00016291
TU15538 other upstream 63528 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 865133 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 870337 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 874423 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 1720270 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 1980664 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 1980664 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 1980664 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2613102 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 9576326 24080017 ~ 24110182 (+) False G14057

Expression Profile