RNA id: AMCG00016287


Basic Information

Item Value
RNA id AMCG00016287
length 2370
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00016287
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14577857 ~ 14591958 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATgtattggttgttttttttaatcctccCGCCTTTGACTGTTTCAGTGTGCCGTTCTGAGGGGGTGACCGCGCTGTACGGAGGTACGATCCAGGTGCCATGCAACAAAGGGGCTCCCATGCCCGAGGATTTAATGTTTGTGAAATGGAAATACGCACAGAAAGAGGATGTTAAAATTGTAGCTGAAAATGATTACAAGGACCGAATCTCGGTGGCCACCAACTACAGCCTGCTGATCAGCCAGGCCAAACTGCAGGACCAGAACACGTTCACCTGCATGGTCGTCACCCCAGGGGACATCACAGAGTACTCCGTCACCGTCCACGTGTACAAGCTGCCTGACACGCCTCAGATCAAAGGCAAGGCCACCCAGCTGGAGAATGGAAAACTGGCTAAGGTGGGAGACTGTGTTGCAGAAGCTGCTAGTCCTGCAGGAAACATTATGTGGTCCAAGAATGGGAAGCCTCTGGTTTCAGATGGGAACTTAATTTTCATCAACAGCTCCGTGCAGATAGACAAGGCCACCGGTCTCTCCACTACATTCTCCAGGCTGGACTACACAGCCAGCAAAGCGGACGTGGGAGCAATGTTCACCTGCTCCGTCCAGCACGTCCTGGGGTCCAATCAAGTATCTGCTGCCGAGACCTTCCCCATCCACTATCCCACAGAGAAAGTCAGTGTACAGGTGCTCAACAAGGTTCCCATCAAAGAGGGAGACAACGTGACCATAAAGTGCACTGCTGACGGGAACCCCCCTCCCACCAGCTACAATTTCTACATTAAGGCAAGTTGTCTATCATTTGATTTCAAGCAAAATTGCGGCAGGCAAGAGAAGGTGATGTCAGACACGTACACTCTGACCGGGGTGACGCGGCAGGACAGTGGGGAATACAACTGCTCCCTTGTCGAGAACGACAAACTCATGGATTCGACCAGCATCGTTGTACACTACCTGGAGGCCAGTCTGAACCCGACAGGCCAGATCACTGGGATGGTTGGCGACAGCGTGAACATCACACTGCAGAAACAATCCTCTGTAGAAATGAAGGTTTCTTGGATGAAGGATAATGGCAAGACTGAAGAACCCAAACTGAGCAAGCTGAGGTACCAGGATGCAGGCTACTACGTCTGTGAAGTGTCTGCTGTCGGGTTACCGGGAGTAAAGAAGAGCTTTGCTTTTGAACTGACTGTTGAAgGGAAGCCACAGGTCAGTAAGCTCACCAAAACCAGCAGTAGTGATGGGAAGCACAAGGTACTGAGCTGTGAAGCCGAGGGATCTCCGAAGCCAATTGTCCGATGGAACATCAACGCCACCACTGAGAAGGAGAGCCCCTACATCAACGGAAAGTTCACCCACACCATCACTGTGGTTCCCCCGGGAAATGTCACTGTCACCTGCACAGCCAGCAACAAGCTGGGCGAGCACGAGCGCTCCATCAGCGTGTCATCTTTCATTGTTGATGAGGATGACCATGAAACCGACAAGTCGGAAGACGTGAATGACCAGGCCAAGCTGATCGTGGGCATCGTGGTGGGGCTGTTGGTGGCCGCCCTCATCGTGGGGCTGGTGTACTGGCTGTACATGAAGAAATCAAAacaAGGAACCTGGAAAACCGGAGAGAAGGAAGCTGGAACTTCAGAGGAGAGCAAAAAGCTGGAGGAGAACAACCACAAGGCAGAAGTGTAGAGACCACGGTGGCAGTGGAGAGATGAGGTGAGGCTGTCGCACACTTTAAACACGCTAATTAATGAGCCCGTGTGAGGAACTCGGAAGCCCTGTGGATGTCTGTGCGGCACAGATTGTAAACCTACCGTTTGTCTTCCAGGGAAGAAGCCGTAACGAGATGCCTTTCACATTGGACTTGCTGTCTAGAGAAAAAGCAAACgaatgacacaaacacacaaactatcTGGAAAGCCATTTGATTGGACGCCATCCTTCAAGCTTTTAACGCACAGCACGTTCAGTGGAAACCATTTTAAAGACAAGCCAGAACTGTACAGAATTAGCGTAACTACCGccaacatttaaagaaaagctcaatggaaatatttgtgttgtatatggattttttttttgcccccccgcccctctcCCCTGAGTCTGCACTgaaacttttgttgtttttccctccTTGTGTTCCTGGTGAATGCCTTTGTTTGATACACTATTTGTTGGTTCAGTGGGTTTCCTGTTTTGTTCAGCtccttttgtttatatttttttctgctttagtaaaaatgtaaattctcGGTACACTATTGACATCCATATAAGTATGTGAATTTCACGGGCGAGCAGAATCGTATCCGACCGCTGCCagatcaccccccccccccccccccccccccccccccccccccccccccc

Function

GO:

id name namespace
GO:0014033 neural crest cell differentiation biological_process
GO:0007409 axonogenesis biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0030424 axon cellular_component
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K06547 ALCAM, CD166; activated leukocyte cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15550 lncRNA downstream 114034 14463617 ~ 14463823 (-) True G12595
TU15547 lncRNA downstream 141326 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA downstream 141326 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA downstream 141420 14431718 ~ 14436437 (-) False G12594
TU15536 lncRNA downstream 149040 14427625 ~ 14428817 (-) True G12585
TU15634 lncRNA upstream 195035 14786993 ~ 14788418 (-) False AMCG00016293
TU15717 lncRNA upstream 601244 15193202 ~ 15193641 (-) True G12702
TU15723 lncRNA upstream 825065 15417023 ~ 15417518 (-) True G12707
TU15762 lncRNA upstream 955092 15547050 ~ 15605487 (-) True G12743
TU15855 lncRNA upstream 1232953 15824911 ~ 15825237 (-) True G12807
AMCG00016282 mRNA downstream 121805 14437388 ~ 14456052 (-) True AMCG00016282
AMCG00016281 mRNA downstream 150621 14420356 ~ 14427236 (-) True AMCG00016281
AMCG00016283 mRNA downstream 184196 14389509 ~ 14393661 (-) True AMCG00016283
AMCG00016284 mRNA downstream 188378 14383900 ~ 14389479 (-) True AMCG00016284
AMCG00016280 mRNA downstream 253682 14306299 ~ 14324175 (-) True AMCG00016280
AMCG00016289 mRNA upstream 117430 14709388 ~ 14733458 (-) True AMCG00016289
AMCG00016293 mRNA upstream 193240 14785198 ~ 14791045 (-) True AMCG00016293
AMCG00016294 mRNA upstream 257892 14849850 ~ 14851113 (-) True AMCG00016294
AMCG00016303 mRNA upstream 545450 15137408 ~ 15139859 (-) True AMCG00016303
AMCG00016302 mRNA upstream 548403 15140361 ~ 15142142 (-) True AMCG00016302
TU15220 other downstream 1018673 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 1707297 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 1707297 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 1714987 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 2248824 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 198245 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 2266583 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2266583 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2266583 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 4499281 19091239 ~ 19105381 (-) True G13367

Expression Profile