RNA id: TU15607


Basic Information

Item Value
RNA id TU15607
length 1874
lncRNA type sense_over
GC content 0.38
exon number 2
gene id AMCG00016288
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14745316 ~ 14783535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAGAGTCTTGCATTGTGAAGGAGGGTTTCTTTTCTGTCGCTGATGACACTTTCCAGTTCCTTCATGGCTGGGCTGTTCACGCAGCCTTGATTCCCACAGATTGATCAATGAAGCTGTGTAGCCTTCATTCTTAATCTGTCTCGCATCACTTTCTCTGTaaacttttttctctctctctctctctctctctctcacttgaaTATTTCCTGGCTGTTCCTCGATTCCTTCACTGTCTCTCATTCTCTTTGAACTAGCTTTCTGCAGCTTCTAGTCCTTCCAGTCAAAGTCCTCTCAGAGCTCCAGGAAAGGACCCTTTTGCAGAGCTCTCTCTCAAGGATTTCTTGTAGAACATCTTTAGCAGATGCAGTTCATGTAATTTGAAGGGAGTCGTTGCTTTCTGAAGATGAGCGCTAAGCGGCAAAACTCTAATCCACTTTGCTGTCTTTACTCTTCAGTGGAAATATCAACATACTATGGACATGTGAAGGATTGAGAGGTGTAATgatatgggggtgggggggtggggaaccATGTTTAAACAGCGTCTCTGGACCGGCGCAaatttttgtaatttgtctAACACAGTAACAGTTTAAGCTGTTGTTATAACCCAACATTGGGATCACTCATCTTACGTGACACCTGTAGATAGATATTGGAGCTGGAAGGGAGGAATTTAGACTTTACTGTTATGTATGAAAAAATACTTGGGTGTAACATACAGCTTGATGTTTTCTTTGGGGGCGGTCGGGGGGGACGGGGAATCATTTAACACTTGATCTGATCATCAATCATGCAGTATCTAATTTAACTGTCACAAATTAGAAATGCTAACTACAGTTTATACTATTgattttggtttttatttcctttttttttaagaagaaaaaaaactattacgTTTGCAGTAGACATTccttgtgtattgtttgtatttatttatgattatccgttaaagacataaaaaacaaaaaaaaacatcgaACACTTCCTTGTGAGAGTGATTCAGGATTATTCATGGGTATGGGTGATTGTATAATTGAGTGACtgagtttcaaaataaatattaaaaaaaacacctgtaaAACTGACTGATAGAGCACTAAATATTCTCTAAAACAGTTTTGTCAAGTACAATTCTTTGTAGCTCAGAATCTCACAACCCTACGTTTGTAAGGGAAATAGGGGagaaatatacaatttattaatCCACATAGTCAATTCTGTGCCTAGGATTTTGCAAGGGAACATTTATCTGACTAGTAAAGCACTACATTTGTGATTCAGCAGTATTGCATTGGGAAGGATCTGTATTGCTTTATGCTTGGcatgtcattattttacattgacaATTATATGGCTGCCTTTCCAATCTGAATGTGAGGAGTTGCCTTCATGTTACGACATCTTTCTAATGACCAGCACTGCAGGAATCTCAACGTGGCAGTAGACGTAGATGGGAGCATTTTCTGTGTTTGGCATCATTGAAAATGGAGGGGAAATATCCATATGGGTCGGTAGTTTCTATGTAAATTTGTAGTAAAGGGGTCCAGTTGAACAGAGAAATGGGGGGAGCACTGTTGATCGGTGCTTTGTGTATATAAAACAGATTCTGTCCATTCGAGGGGTATGAAGGATAGTCTGAAATATGAAGGCAATTCTAGTCATTAATTTAGCATATTTGCTGCATTGTCCTTGCAGattctatttttgtttataaaaaaaaaatgtatgtaagcAGAAATGGGTTGATTTTCAAATAAAGTGCAGCTTCcacaaagtttttattttatttacatgctTTGTTCTTCTCATTGCAGTGTTACCTGTAGAAGAGCATTGTGTTATTCAATGAACTCATGTAGAacatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15565 lncRNA upstream 164603 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA upstream 198983 14576587 ~ 14581329 (+) True G12605
TU15543 lncRNA upstream 328558 14451510 ~ 14451754 (+) True G12591
TU15541 lncRNA upstream 331100 14448812 ~ 14449212 (+) True G12589
TU15511 lncRNA upstream 381898 14397249 ~ 14398414 (+) True G12566
TU15728 lncRNA downstream 680542 15464077 ~ 15464312 (+) True G12712
TU15803 lncRNA downstream 957651 15741186 ~ 15743647 (+) True G12763
TU15864 lncRNA downstream 1136048 15919583 ~ 15924725 (+) True G12816
TU15957 lncRNA downstream 1749569 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 1825183 16608718 ~ 16608985 (+) True G12896
AMCG00016286 mRNA upstream 204763 14540441 ~ 14575549 (+) True AMCG00016286
AMCG00016285 mRNA upstream 276621 14502134 ~ 14503691 (+) True AMCG00016285
AMCG00016278 mRNA upstream 396633 14348972 ~ 14383679 (+) True AMCG00016278
AMCG00016279 mRNA upstream 481533 14296362 ~ 14298779 (+) True AMCG00016279
AMCG00016271 mRNA upstream 497722 14270317 ~ 14282590 (+) True AMCG00016271
AMCG00016292 mRNA downstream 34340 14817875 ~ 14827375 (+) True AMCG00016292
AMCG00016290 mRNA downstream 47192 14830727 ~ 14843857 (+) True AMCG00016290
AMCG00016291 mRNA downstream 61301 14844836 ~ 14845843 (+) True AMCG00016291
AMCG00016295 mRNA downstream 152460 14935995 ~ 14944083 (+) True AMCG00016295
AMCG00016298 mRNA downstream 204328 14987863 ~ 15041451 (+) True AMCG00016298
TU15538 other upstream 341706 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 1143311 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 1148515 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 1152601 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 1998448 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 1700820 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 1700820 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 1700820 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2333258 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 9296482 24080017 ~ 24110182 (+) False G14057

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU489532 True 1198 lncRNA 0.40 1 CI01000304 13976965 ~ 13978162 (+)
eurasian perch (Perca fluviatilis) TU317274 False 286 lncRNA 0.60 4 NC_053135.1 9930718 ~ 9931225 (-)
striped catfish (Pangasianodon hypophthalmus) TU317274 True 2268 lncRNA 0.38 2 NC_047611.1 12335058 ~ 12349656 (-)