RNA id: AMCG00016290


Basic Information

Item Value
RNA id AMCG00016290
length 3311
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00016290
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14830727 ~ 14843857 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGCAGCCTGGTGCCACTTGTAAGACACCTGAGCCAAGAGGACAGCAAGACTGGCAAGATAAATGATCTaaaatccttctgggagaaggAGAAAAGTGGGCCAAAAATTATTATAGGAAAACCAAAAGATGTTACAGAGACTTGTTTCTCTGGGACTGAAGGAAAACAGCATCTAAAAGACAGCCCTTTGCAGTCCAGTAAAAGGTTTACTGCATCTGAGATAGATCTTAGGGTAGATGATGCTGATCCCAGCAATGGCATTGAGAGAAAGAGCACTTCCTCTGTGTCTAGATCAAAGCCTACTTTTACAGTTTTATCTATGAAGGAAAGAGTGCAAAATGATCCCATTGGTCCGACTAGCTTGCAGTTCAAGAACCTCCGTGACTTCTGGGGAGGGACATCCGCAGCACAGCAGAGGCCTTCTCTGGTCAAGCTGAAGTCAGGTTCCATTGAAAGCATGCCAGTTAATCTAAAAAACCCTACTAGTCCTACTTCAAAGGCTCAAGATAAAAATCTATTCCTTAACCCAAATTATTATGCCAAGGTCCTCCCAACTGAACCAGAAAGTATTCAAGGCAGGTCCTTTGGAGTAGAAGAACAGCCAATGAGAGAATCTAAGAATGAAACAGAGATGAAAGTAGAACAATCAGCACCTCAGCTGAGTGAGGGCAAGACCAACGTAGGCAAGGGTCCCCTGCCAGAAGCTTTAGCGAGAAAACCCCCTTCCCCAACTGTGTCTTTTCAAAGGCAAGGAGATTTGACTCATGGAAAAGATGTGGGAGCCGAGCAGGAGAGGTTTTTTAGTAGGGTTATGGAGCGGAGCAAAGGGTTTCCCCCTCAGGGGCAGAGTCCTCAATCTCCACCATTGAAGAGCATGGCCAGGAGTTCAGTGAGTTCAGAAGTGCCTTTGCAGACCTCAGGCACCAACGTCAGTGCGGTTTGCCCTCCTCAGCCAGccagaagaaaacacaaagaaagcCCAAATGAAAGACAATACCAAACGGTGCCTCAGCCCAGACTAGAAATGCATGAAGGAGACCTGCAAGAAAGACTGAACGAAATCCCTCCTGAGCCTTTCAATGGAACACATAACGGCAGTCCCAGCAAAGAGGAAAATGAATCAAAAGCACCTGTGATGAAGGAAGACCTAATCTTGAAGAAACATCAGAGCAATGTCCTTTCTCCTTGGGTGAAGCCGGCTGATGAAGAAATGTCTTTCCAAACCCAGGAAATTGAGGTCCCCGTGGGTATTGGAGAGAAAATGGAAACCCATAGTGTGCTACAGAGAGAGGATTTGCTAGAAGAAGATGATTCTGACCACGAGTTTGGGGAAGTAGCTAAGCCTGTCAGAGCCAGTACACCTAATATGGCAGAGGACATCCAGGGGAAGCCAAGCAGCGAGATGCAACACTCCTCGCCTCTCTGTGATAATACAGAAGACAACGAGTACGAGGATTCCTCCAGGAGCAGTGCATCTGACACCTGGTCTTTCACTTGGGCAAGTTCAGCCTGTTATGATGAAGACCAAAACCTGGTTAGGAGGGTCTTGGAAAGGAGCTCCAATAGGCCTGTATCTTCTTCAAAAAGTCTGGAGGACATTTCATCGTCATTGCCAAGAGACGAGAGAAGCAAAACCACTTCAGGGGATGAATTAGCACTTAGTGTGGAAGACgTTTCCACAGTGCCCAATACGCCAACCACCACGTTTTTAGACAACGAGAAGATGAAGCAAATGAGCAGATCTGTCCCTTTCCTGCAGCAAGAGAGTGATGGCACTGACTCCACCTCAGAGAACAGTTTCCACATTGGCAGAAAGAAGAAGATTGGCAGCTCTCTAACCAATCTTAGCAACTCTTCTGGCATGGCATCAATGTCCTCTGTCAGTGGCAGTGTAATGAGCATCTACAGTGGAGATTTCGGGAATGTGGAAGTCAAAGGGAATATTCAGTTTGCCATGGACTATGTGGAGCAGTTGAATGAGTTTCATATCTTCGTGGTCCAGTGCAAGGACTTGGCAGCTGCTGATCCCAAAAAGAACCGCTCAGACCCaTACGTTAAGAGTTACCTGTTACCTGACAAAGGAAAGATGGGTAAAAGGAAGACCTCAGTGAAAAAGAAGACTCTAAATCCGACCTACAACGAGATCCTTCGGTATAGAATCGCCATGGAGACTCTCAAGACTCAGACTCTGAATCTGTCTGTATGGCACAACGACACTTTTGGCCGCAATAGCTTTCTGGGTGAAGTGGATGTGGACTTATCCAAATGGGACTGGAACAACACACAAATGAACTTCTTCCCTCTGAAACCACGGGCAACAGACTACAGAGGAGAGATGAGATTAGCCCTACGTTTCCTCCCTCAGATCTCACACATGCTCCCAGACACCAGCAGGAAAAGCCGTCAGAAGACCCGGGTCCTGAAGAAGACGGCAAACCCTATGTTCAATCACACGCTGGTGTATGACGGCTTCAAGGCCGAGGACCTGCGGGAGGCCTGTGTGGAGCTCACCGTGTGGGACCACGACCGGCTCGTCAACCACTTCCTGGGAGGACTGCGGCTCGGCCTTGGCACGGGTAAAAGTTATGGGGCAGTCGTGGACTGGATGGACTCAAACACAGATGAAGCAACTTTGTGGGAACGAATGATTGACTCCCCGAATGAATGGGTGGAAGATGTCTTACCTTTGAGAATGTTAATGATGGCAAAGAGTGTGTGGAAATAGAGGAGGTtgtggaatgtatttttttatactgtatGAATACCTGCCAATTATTAATCAGCACCCCCTACCCCCTGGTCTGCCCTTTTAATATCCTCTGCACGGTACTGGAAATGCTCATATTTTGtggtaagaaaacaaacaagaaaaaaaaaatgtatgatattATTTTATCCAAAGTgcctcattaaaaatgtatcttagTGTCAAGTTATCTGAAAGATTAACATGTCTTATTATCAAATGTTGCATTAAGCCAAggtatgattttatttgtaacatGTTTACATTGGTTCTATATCTCACCTGCTAGATTAGGGACTTGTAATTGTTGTATGCCGTTCGAAAGACAATGTCAGAAATAAATGACATTAAgaaaaatgttctttatttgtgttttactgcCAAACAAATGTTGCATATATCTCTGCTATGTTACTTGTTCACTCAATTTATTACGTTAATGTTTACTTTCCAGCTCGTTTTCTGTAATCTATCAAATAATGACATACATATTGTCCAATTTAATTAGCATTGCTTTACAGTGTATTTCTATCTACAATAAAGTTTTAGACTCACAATGGCAA

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15607 lncRNA upstream 47192 14780312 ~ 14783535 (+) False AMCG00016288
TU15565 lncRNA upstream 215018 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA upstream 249398 14576587 ~ 14581329 (+) True G12605
TU15543 lncRNA upstream 378973 14451510 ~ 14451754 (+) True G12591
TU15541 lncRNA upstream 381515 14448812 ~ 14449212 (+) True G12589
TU15728 lncRNA downstream 620220 15464077 ~ 15464312 (+) True G12712
TU15803 lncRNA downstream 897329 15741186 ~ 15743647 (+) True G12763
TU15864 lncRNA downstream 1075726 15919583 ~ 15924725 (+) True G12816
TU15957 lncRNA downstream 1689247 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 1764861 16608718 ~ 16608985 (+) True G12896
AMCG00016292 mRNA upstream 3352 14817875 ~ 14827375 (+) True AMCG00016292
AMCG00016288 mRNA upstream 48691 14745316 ~ 14782036 (+) True AMCG00016288
AMCG00016286 mRNA upstream 255178 14540441 ~ 14575549 (+) True AMCG00016286
AMCG00016285 mRNA upstream 327036 14502134 ~ 14503691 (+) True AMCG00016285
AMCG00016278 mRNA upstream 447048 14348972 ~ 14383679 (+) True AMCG00016278
AMCG00016291 mRNA downstream 979 14844836 ~ 14845843 (+) True AMCG00016291
AMCG00016295 mRNA downstream 92138 14935995 ~ 14944083 (+) True AMCG00016295
AMCG00016298 mRNA downstream 144006 14987863 ~ 15041451 (+) True AMCG00016298
AMCG00016296 mRNA downstream 209188 15053045 ~ 15054925 (+) True AMCG00016296
AMCG00016297 mRNA downstream 244022 15087879 ~ 15105018 (+) True AMCG00016297
TU15538 other upstream 392121 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 1193726 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 1198930 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 1203016 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 2048863 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 1640498 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 1640498 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 1640498 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2272936 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 9236160 24080017 ~ 24110182 (+) False G14057

Expression Profile