RNA id: AMCG00016291



Basic Information


Item Value
RNA id AMCG00016291
length 897
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00016291
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14844836 ~ 14845843 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAAAATAGGATGCGTCACTCCCAGCGCCGCAGAAGCGGCAGAGTCACCCCCGCCTTGAGCGAGGAACTGAAAGTGGTTTTGACCGGCGATTTATTTTGCAGCTCTGATCCGGGATCATGCCGGAAACGGGCTAAAACACAGCCGCAGCGCAGCGCCATGATGCCCAGGAAGAGAGCGCGGCGTGGGGAAGCCCCCCAGCCCGAACCCCAGCCCGGCAGCGCGCTGTTCGACGTGGAGATCTGCGAGTCCATAGAAGTGACGGACAGTGTGCGCAGCTGCCCCGCCGCGGCTCTTTCCTCGGAGAGCGACGACCTGTGCGGCCTGGAGCTGGACCGTTTGTTCAGACTGGACGAGCTGGACTGGGCTTTTGAACGAGAGGCCGGGTCTCCTTTCTTGGAAGAGGACGGATTTCCAGATCTGCTCGATCCTGCGAGAGAAGCGATCAGTGCTGCGGGCGATGCAGCGCCCCTCCTGGGCTCGCTGGCGGACCCGAGGGAGCCGGGCGGGGGCGCTGAGCCGGGGTACGGGCGCGGTCCCAGTGCGCAGCCGTGCAGAGACGACAGCTCGGGGAAGAGCAATAAAAACGCCATCGCAGCGCGGCTCAATCGCCTGCGGAAGAAAGAGTACATCCGCGGCCTGGAAACTAAAGTGAGCTCCATGGCCACCGAGAACAGAGACCTGAGAGAGGAGAACCGGCACCTGAACAAGCGGGTGGAAGAGCTGGAAGACGAGACCAGGAACGAGCACGACTACGCCCTGCCGCGGAGCGGGCCGAGGCCGGGGCTGAGGCCGGGCGGGCGGGGCGCTGCGGGCGGCGTGTGTCTGCACGTCGATAACAACCACGTGTCCGTGGAGTTCTGCACTAAGTGCGCAGACAGCGCAAGCGCGGCGCTCACA

Function


GO: NA

KEGG:

id description
K21548 CREBZF; ATF/CREB family transcription factor

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15607 lncRNA upstream 61301 14780312 ~ 14783535 (+) False AMCG00016288
TU15565 lncRNA upstream 229127 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA upstream 263507 14576587 ~ 14581329 (+) True G12605
TU15543 lncRNA upstream 393082 14451510 ~ 14451754 (+) True G12591
TU15541 lncRNA upstream 395624 14448812 ~ 14449212 (+) True G12589
TU15728 lncRNA downstream 618234 15464077 ~ 15464312 (+) True G12712
TU15803 lncRNA downstream 895343 15741186 ~ 15743647 (+) True G12763
TU15864 lncRNA downstream 1073740 15919583 ~ 15924725 (+) True G12816
TU15957 lncRNA downstream 1687261 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 1762875 16608718 ~ 16608985 (+) True G12896
AMCG00016290 mRNA upstream 979 14830727 ~ 14843857 (+) True AMCG00016290
AMCG00016292 mRNA upstream 17461 14817875 ~ 14827375 (+) True AMCG00016292
AMCG00016288 mRNA upstream 62800 14745316 ~ 14782036 (+) True AMCG00016288
AMCG00016286 mRNA upstream 269287 14540441 ~ 14575549 (+) True AMCG00016286
AMCG00016285 mRNA upstream 341145 14502134 ~ 14503691 (+) True AMCG00016285
AMCG00016295 mRNA downstream 90152 14935995 ~ 14944083 (+) True AMCG00016295
AMCG00016298 mRNA downstream 142020 14987863 ~ 15041451 (+) True AMCG00016298
AMCG00016296 mRNA downstream 207202 15053045 ~ 15054925 (+) True AMCG00016296
AMCG00016297 mRNA downstream 242036 15087879 ~ 15105018 (+) True AMCG00016297
AMCG00016300 mRNA downstream 520675 15366518 ~ 15367769 (+) True AMCG00016300
TU15538 other upstream 406230 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 1207835 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 1213039 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 1217125 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 2062972 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 1638512 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 1638512 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 1638512 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2270950 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 9234174 24080017 ~ 24110182 (+) False G14057

Expression Profile