RNA id: AMCG00016292


Basic Information

Item Value
RNA id AMCG00016292
length 1269
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00016292
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14817875 ~ 14827375 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGTGAtcctttgttttccttcatcCTCCAGGCAACTGCAGAACACAGTACATGATAATGGCAAACTGAAGTACATGACAGGAGAGTGGTTCTACGAAGCCAAGTCGAAGAGGCACAGAGACAAAATACATGGGTCTGACATCATACGGGCGTCGATGAGGCAGAAGAAACCAGTGACGCTCCGTGAGTACTCCTCTACCAGTCCCCAGGGCATATCCGAggaatgctttgttttattgGAACTGAGCCAGaccagaggaggagagaggccCAGCTTCATCAACAATGGGAACAGGGACATATTTGTCTCCCCCGAACTCTCAGGACTCATCGAGGAGccggaggaagaggaggatcaGGAGGGAGAAAGATTCATACACACTGTGCCATTGTCTGTCATTGTATTTTACCCATCCCCATTGTCCCTCCCTGTTTTTGCAGAGAATTTGCCACCAACGCAGAACGCCCTACCCAGTGTTATTAATCTAAATTCAGAGAGTCCTGGTTCATCCCAACAAAACATTGAGCAATTGCCGGTGCCAAAAAAGAGAACCAAAATTTACAAACCACAGGACTCTTTCTCAGACAGCGATGGCCCCTTCCCGAGGCTGAGTAATAAGAGAGACTCGGTTAAGAATCCCGGCACTCCAAGAGGAATCCTAAAGCACAACTCCAGCTGCAGCTCCAATGACTCTGAAATGTTACAGAGCAACAACGGCCACAGCGTCAATCGTCCAGAACCTCCGAGCAGTCGAACCCCTAATGCTCAGACAGTCGTCCCACAGATTGCAGCTGAAAGAGTGGAAGACAGCAGAGAGGGAACAGAGGAATTCTCTTTCAATTCCCTGGAGAGGAAGCAAGTCAGATTCTCCCCATCAGTTAGACAGAAGGATCTTAACAGAGCATTAGAGTTACAAGATGGCAGGGAACTGGGTGAGCATGACATGCTGGATTTGGATTCTACTTCTACTCCAGATGCAGAGGAGGACTACATCTTAGACAGGAGTGAGCAAGACAATGGAGGAGGCAGTGGGCTGTCCCTCACTGATGCTCTCACTGAGGAGTTTCAGGAACCAGAAGACTCCACATTGACTTCTGCCACCACCACACTCAGTGATAATGCACAGCCTCTTTCGCTCTCTGTGAATGAAGTAGGACCGGCTGGTGCAGGAGAAAGAGAGCAGCTTCGGAGTAAAGGCACTGAGCCCCCCGTTGCCTATCTGGGGTTACACAACCAGAGACTTATGTCAAAACCCATCAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15607 lncRNA upstream 34340 14780312 ~ 14783535 (+) False AMCG00016288
TU15565 lncRNA upstream 202166 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA upstream 236546 14576587 ~ 14581329 (+) True G12605
TU15543 lncRNA upstream 366121 14451510 ~ 14451754 (+) True G12591
TU15541 lncRNA upstream 368663 14448812 ~ 14449212 (+) True G12589
TU15728 lncRNA downstream 636702 15464077 ~ 15464312 (+) True G12712
TU15803 lncRNA downstream 913811 15741186 ~ 15743647 (+) True G12763
TU15864 lncRNA downstream 1092208 15919583 ~ 15924725 (+) True G12816
TU15957 lncRNA downstream 1705729 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 1781343 16608718 ~ 16608985 (+) True G12896
AMCG00016288 mRNA upstream 35839 14745316 ~ 14782036 (+) True AMCG00016288
AMCG00016286 mRNA upstream 242326 14540441 ~ 14575549 (+) True AMCG00016286
AMCG00016285 mRNA upstream 314184 14502134 ~ 14503691 (+) True AMCG00016285
AMCG00016278 mRNA upstream 434196 14348972 ~ 14383679 (+) True AMCG00016278
AMCG00016279 mRNA upstream 519096 14296362 ~ 14298779 (+) True AMCG00016279
AMCG00016290 mRNA downstream 3352 14830727 ~ 14843857 (+) True AMCG00016290
AMCG00016291 mRNA downstream 17461 14844836 ~ 14845843 (+) True AMCG00016291
AMCG00016295 mRNA downstream 108620 14935995 ~ 14944083 (+) True AMCG00016295
AMCG00016298 mRNA downstream 160488 14987863 ~ 15041451 (+) True AMCG00016298
AMCG00016296 mRNA downstream 225670 15053045 ~ 15054925 (+) True AMCG00016296
TU15538 other upstream 379269 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 1180874 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 1186078 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 1190164 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 2036011 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 1656980 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 1656980 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 1656980 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2289418 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 9252642 24080017 ~ 24110182 (+) False G14057

Expression Profile