RNA id: AMCG00016293


Basic Information

Item Value
RNA id AMCG00016293
length 1113
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00016293
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14785198 ~ 14791969 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACaagtcaaaagaaaagaaatagaaGAGTTCCTGTCTGAAGTGAGCCAACTGGAGGAGAAGAACCAGAGATACAAGAAACGGAAGAAGCAGCTGACGGAGGAGCAGACGGGGCACATCCGCACTCTGCTGAAGCAGGCAAAGGAGCAGGAGCGCGACCTGGAGCAGAGCGAGGTGGTGAACAGGGAGCAGGTCGAGCAGGCCCAGAGAGAGTACTGGGAGCTGGCCAGGACCAGCGATCACCAACTGGAAGAGCTGCGCAGGGAGCTCCGAGGTCTGGAGCAAAAGGTCCTGGCGGGGCACAGTGAGAGACGCTGCTGGCTGGCGTACAAGACAGTGGGCAGCCAGGAGCACGGCCTGCAAGTCCAGCTGCTGGAGGGGGAACTCCGACAATTGCAGCGGGACTTTCAGGAGATAGCAGGTCTGTGTCTCTCGGTTCATTTTCCATGTGGTGGTGCTACGGCCATTAAACATCTTGGCAAACACAGCCGTCAGGAGATCAGGGAGAATGAATGGTTGAAAAAAGAGATAACAATTTACAATAGAGAAGTTGCTTTACTGGAGAATGCCGTCCAGAAACTGGAGGAGGAGAATTTGGCGATCGTAAATGAGATGTTTGAGCACAGACTGGGTAACCTGAAGATCTCCCGAAAGGTGTTCCTCACTGAGGCAGCTGGCCTAGATGTGATTGACACCGGGATGCTGGGGGAAGATTTCGACAAACTGTATCTCACTGATCAACCAGACGCACCTTCCAGACCTATACATTTCCTCCTGGCAGCAGCGGAAGGAGGGAACGGTCTCGGCGTACCCAGAGAACTGGAGGGAGATGAAAGAGGCGCCAGCTGCAGCCGGCCGGCCGACCAGCCAACTGCATCTCCCGCGCAGGATCTCAGAGTCGCGCTGTACGGGAGCCAGGTGAACTTTCAAGAGCCCATGCAGCTGGGGCCCCTGGAGCTGAAGCTGCTGAGTGTGGTGGGCCAAGCCATGCCCATTCATCAAGCCCAGTCCTCCCCAAGACAGGACTGTGGCCCCCGCACAGGGCGGGAGACAGAGGATTGGCCCGTTACTTCGAACATGATCCAGTCTAGATTTGGAGAACCGGCCCCCAGC

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15550 lncRNA downstream 321375 14463617 ~ 14463823 (-) True G12595
TU15547 lncRNA downstream 348667 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA downstream 348667 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA downstream 348761 14431718 ~ 14436437 (-) False G12594
TU15536 lncRNA downstream 356381 14427625 ~ 14428817 (-) True G12585
TU15717 lncRNA upstream 402157 15193202 ~ 15193641 (-) True G12702
TU15723 lncRNA upstream 625978 15417023 ~ 15417518 (-) True G12707
TU15762 lncRNA upstream 756005 15547050 ~ 15605487 (-) True G12743
TU15855 lncRNA upstream 1033866 15824911 ~ 15825237 (-) True G12807
TU15857 lncRNA upstream 1037721 15828766 ~ 15829026 (-) True G12809
AMCG00016289 mRNA downstream 51740 14709388 ~ 14733458 (-) True AMCG00016289
AMCG00016287 mRNA downstream 193240 14577857 ~ 14591958 (-) True AMCG00016287
AMCG00016282 mRNA downstream 329146 14437388 ~ 14456052 (-) True AMCG00016282
AMCG00016281 mRNA downstream 357962 14420356 ~ 14427236 (-) True AMCG00016281
AMCG00016283 mRNA downstream 391537 14389509 ~ 14393661 (-) True AMCG00016283
AMCG00016294 mRNA upstream 58805 14849850 ~ 14851113 (-) True AMCG00016294
AMCG00016303 mRNA upstream 346363 15137408 ~ 15139859 (-) True AMCG00016303
AMCG00016302 mRNA upstream 349316 15140361 ~ 15142142 (-) True AMCG00016302
AMCG00016304 mRNA upstream 351211 15142256 ~ 15358334 (-) True AMCG00016304
AMCG00016310 mRNA upstream 765824 15556869 ~ 15564100 (-) True AMCG00016310
TU15220 other downstream 1226014 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 1914638 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 1914638 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 1922328 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 2456165 12323161 ~ 12329033 (-) True AMCG00016211
TU16024 other upstream 2067496 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2067496 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2067496 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 4300194 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 5344152 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile