RNA id: TU15638


Basic Information

Item Value
RNA id TU15638
length 747
RNA type TUCP
GC content 0.46
exon number 4
gene id AMCG00016293
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14785198 ~ 14791969 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGCGGGATTTGTTTCCATGGGAGCGAGTGGAAATCATACGGTTCACACCGAAAAGCAGCGAGACGAGTCTGTACCGCAGCGGGAGACGGTAATCAACTTTTAAATATACACGCACGATAAGAGTTTCTAATataaacgtttttttttaatatgatttctGTAGTTGTATACTAATGCAGCTTTGTGTTTGCGTCCTGTAGCCTGCATACACTAGTATCACTGAGAACAGAATTACTTGCATTGAAATGAaccttgttttcattaaaaatagcaTACAATAATTGAAAGGGCTATTAAATTAAACGCAGTAATAGTTAATTCTCCAAATTCATTGCAACTGGGAACTGGGCCACTGGTTAGTGACAATGGGAAAGAAGAAACCTGCTGCCCCGGAGGACAAGATGACTTTAGCGGAGGCGTTCATAACTTTTCAAATACaagtcaaaagaaaagaaatagaaGAGTTCCTGTCTGAAGTGAGCCAACTGGAGGAGAAGAACCAGAGATACAAGAAACGGAAGAAGCAGCTGACGGAGGAGCAGACGGGGCACATCCGCACTCTGCTGAAGCAGGCAAAGGAGCAGGAGCGCGACCTGGAGCAGAGCGAGGTGGTGAACAGGGAGCAGGTCGAGCAGGCCCAGAGAGAGTACTGGGAGCTGGCCAGGACCAGCGATCACCAACTGGAAGAGCTGCGCAGGGAGCTCCGAGGTCTGGAGCAAAAGGTCCTGGCGGGGCACAGTGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15634 lncRNA downstream 1785 14786993 ~ 14788418 (-) False AMCG00016293
TU15550 lncRNA downstream 326380 14463617 ~ 14463823 (-) True G12595
TU15547 lncRNA downstream 353672 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA downstream 353672 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA downstream 353766 14431718 ~ 14436437 (-) False G12594
TU15717 lncRNA upstream 401233 15193202 ~ 15193641 (-) True G12702
TU15723 lncRNA upstream 625054 15417023 ~ 15417518 (-) True G12707
TU15762 lncRNA upstream 755081 15547050 ~ 15605487 (-) True G12743
TU15855 lncRNA upstream 1032942 15824911 ~ 15825237 (-) True G12807
TU15857 lncRNA upstream 1036797 15828766 ~ 15829026 (-) True G12809
AMCG00016289 mRNA downstream 56745 14709388 ~ 14733458 (-) True AMCG00016289
AMCG00016287 mRNA downstream 198245 14577857 ~ 14591958 (-) True AMCG00016287
AMCG00016282 mRNA downstream 334151 14437388 ~ 14456052 (-) True AMCG00016282
AMCG00016281 mRNA downstream 362967 14420356 ~ 14427236 (-) True AMCG00016281
AMCG00016283 mRNA downstream 396542 14389509 ~ 14393661 (-) True AMCG00016283
AMCG00016294 mRNA upstream 57881 14849850 ~ 14851113 (-) True AMCG00016294
AMCG00016303 mRNA upstream 345439 15137408 ~ 15139859 (-) True AMCG00016303
AMCG00016302 mRNA upstream 348392 15140361 ~ 15142142 (-) True AMCG00016302
AMCG00016304 mRNA upstream 350287 15142256 ~ 15358334 (-) True AMCG00016304
AMCG00016310 mRNA upstream 764900 15556869 ~ 15564100 (-) True AMCG00016310
TU15220 other downstream 1231019 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 1919643 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 1919643 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 1927333 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 2461170 12323161 ~ 12329033 (-) True AMCG00016211
TU16024 other upstream 2066572 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2066572 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2066572 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 4299270 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 5343228 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile