RNA id: AMCG00016294


Basic Information

Item Value
RNA id AMCG00016294
length 675
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00016294
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14849850 ~ 14851113 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGACAGAAACACGTTTTCAGAACTGCCCGCTGCAAGAGAAGGGGCAGACAGACCCCTTCCTAGAGCCGTGGTCATGGAGTTAATTATGAAGAAGTTTGAACAACTTCCAGACACAGACAAAAAACCCTATGCATCCACTTTCAACATGTCCTCATTGCGCAGGAAGTTCTACAGCTACGGCCCGGTGTACTTGGGGATAAACGCGGCTTTCTCGGGACTGATCGCCAACAGTTTCTTCCGGCGATTACTACACGTTTCTCAAGCCCTGCTCACTTCGAGTTTGCCCATGGCTATTCTTCCCTTTCTGACTACTGTGGCACTATATAACGGCGTTGTTTCACAGCCTTTACTTTCAGGAGACCTCAACTGTCCTACTTGTGTTGTAGTCAGAGGTGGGCTGGTCGGCTCTCTTGCGGGTGGCTTGTATCCTATATTGTTAGCCTTACCTGTGAATGCAGCTCTTGCAGCAAGGTACAACACCTCTCCAATGCCAGAGAAGGGAACTGCATTGCGCTTTTGGAGCCAAGTTTCTCAACCTGTTCTGAAGAGAATGGGCTTCGTGCTCATTCTTCAAGCAGTCTTTGGGATCTACTTGAGCTCCAGGCATTATGGGATCTACAACAAAATGCTGCAGCTACCCTCACCTGACAGTGAAGTGCTGATGGACTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K18157 TMEM126A; transmembrane protein 126A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15634 lncRNA downstream 61432 14786993 ~ 14788418 (-) False AMCG00016293
TU15550 lncRNA downstream 386027 14463617 ~ 14463823 (-) True G12595
TU15547 lncRNA downstream 413319 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA downstream 413319 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA downstream 413413 14431718 ~ 14436437 (-) False G12594
TU15717 lncRNA upstream 342089 15193202 ~ 15193641 (-) True G12702
TU15723 lncRNA upstream 565910 15417023 ~ 15417518 (-) True G12707
TU15762 lncRNA upstream 695937 15547050 ~ 15605487 (-) True G12743
TU15855 lncRNA upstream 973798 15824911 ~ 15825237 (-) True G12807
TU15857 lncRNA upstream 977653 15828766 ~ 15829026 (-) True G12809
AMCG00016293 mRNA downstream 58805 14785198 ~ 14791045 (-) True AMCG00016293
AMCG00016289 mRNA downstream 116392 14709388 ~ 14733458 (-) True AMCG00016289
AMCG00016287 mRNA downstream 257892 14577857 ~ 14591958 (-) True AMCG00016287
AMCG00016282 mRNA downstream 393798 14437388 ~ 14456052 (-) True AMCG00016282
AMCG00016281 mRNA downstream 422614 14420356 ~ 14427236 (-) True AMCG00016281
AMCG00016303 mRNA upstream 286295 15137408 ~ 15139859 (-) True AMCG00016303
AMCG00016302 mRNA upstream 289248 15140361 ~ 15142142 (-) True AMCG00016302
AMCG00016304 mRNA upstream 291143 15142256 ~ 15358334 (-) True AMCG00016304
AMCG00016310 mRNA upstream 705756 15556869 ~ 15564100 (-) True AMCG00016310
AMCG00016308 mRNA upstream 726320 15577433 ~ 15596800 (-) True AMCG00016308
TU15638 other downstream 57881 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 1290666 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 1979290 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 1979290 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 1986980 12862099 ~ 12862870 (-) False AMCG00016226
TU16024 other upstream 2007428 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2007428 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2007428 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 4240126 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 5284084 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile