RNA id: AMCG00016295



Basic Information


Item Value
RNA id AMCG00016295
length 216
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00016295
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14935995 ~ 14944083 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAAAAGTACCGATATCAGGATGAAGACTCTCCACCACAAGATCACGGCTTCCCTCGCCTAACAAATGAAGTCCGGCCCCCGGAGCTGGTGCACGTGTCCGAGAAGAACCTGTCCGAGATCGAGAACGTCCACGGATATGTTTCTCATTCGCACATTTCTCCCCTTAAGGTCAGTCTGGATATTGGGTGCCTGGGGCTTGTGGTGCGAGTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15607 lncRNA upstream 152460 14780312 ~ 14783535 (+) False AMCG00016288
TU15565 lncRNA upstream 320286 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA upstream 354666 14576587 ~ 14581329 (+) True G12605
TU15543 lncRNA upstream 484241 14451510 ~ 14451754 (+) True G12591
TU15541 lncRNA upstream 486783 14448812 ~ 14449212 (+) True G12589
TU15728 lncRNA downstream 519994 15464077 ~ 15464312 (+) True G12712
TU15803 lncRNA downstream 797103 15741186 ~ 15743647 (+) True G12763
TU15864 lncRNA downstream 975500 15919583 ~ 15924725 (+) True G12816
TU15957 lncRNA downstream 1589021 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 1664635 16608718 ~ 16608985 (+) True G12896
AMCG00016291 mRNA upstream 90152 14844836 ~ 14845843 (+) True AMCG00016291
AMCG00016290 mRNA upstream 92138 14830727 ~ 14843857 (+) True AMCG00016290
AMCG00016292 mRNA upstream 108620 14817875 ~ 14827375 (+) True AMCG00016292
AMCG00016288 mRNA upstream 153959 14745316 ~ 14782036 (+) True AMCG00016288
AMCG00016286 mRNA upstream 360446 14540441 ~ 14575549 (+) True AMCG00016286
AMCG00016298 mRNA downstream 43780 14987863 ~ 15041451 (+) True AMCG00016298
AMCG00016296 mRNA downstream 108962 15053045 ~ 15054925 (+) True AMCG00016296
AMCG00016297 mRNA downstream 143796 15087879 ~ 15105018 (+) True AMCG00016297
AMCG00016300 mRNA downstream 422435 15366518 ~ 15367769 (+) True AMCG00016300
AMCG00016299 mRNA downstream 435241 15379324 ~ 15406751 (+) True AMCG00016299
TU15538 other upstream 497389 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 1298994 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 1304198 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 1308284 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 2154131 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 1540272 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 1540272 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 1540272 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2172710 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 9135934 24080017 ~ 24110182 (+) False G14057

Expression Profile