RNA id: AMCG00016296


Basic Information

Item Value
RNA id AMCG00016296
length 315
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00016296
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15053045 ~ 15054925 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATGGCAGAGCGGACACTTCTGACTATATGTACTATCTGGCTTGTCTGTACAGAGAACCGCGGAAGATCGTGCTGCACAAGGGCTCCACGGGCCTGGGCTTCAACATCGTGGGCGGCGAGGATGGGGAAGGGATCTTTGTGTCCTTCATCCTGGCCGGGGGGCCCGCCGACCTGAGCGGAGAGCTGCGGAGGGGAGACCAGATCCTGTCGGTAAATGGCATAGATCTGCGGGGTGCTACACATGAACAGGCCGCAGCAGCCCTGAAAGGAGCCGGGCAGACGGTGACCATCATCGCTCAGTATCGGCCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15607 lncRNA upstream 269510 14780312 ~ 14783535 (+) False AMCG00016288
TU15565 lncRNA upstream 437336 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA upstream 471716 14576587 ~ 14581329 (+) True G12605
TU15543 lncRNA upstream 601291 14451510 ~ 14451754 (+) True G12591
TU15541 lncRNA upstream 603833 14448812 ~ 14449212 (+) True G12589
TU15728 lncRNA downstream 409152 15464077 ~ 15464312 (+) True G12712
TU15803 lncRNA downstream 686261 15741186 ~ 15743647 (+) True G12763
TU15864 lncRNA downstream 864658 15919583 ~ 15924725 (+) True G12816
TU15957 lncRNA downstream 1478179 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 1553793 16608718 ~ 16608985 (+) True G12896
AMCG00016298 mRNA upstream 11594 14987863 ~ 15041451 (+) True AMCG00016298
AMCG00016295 mRNA upstream 108962 14935995 ~ 14944083 (+) True AMCG00016295
AMCG00016291 mRNA upstream 207202 14844836 ~ 14845843 (+) True AMCG00016291
AMCG00016290 mRNA upstream 209188 14830727 ~ 14843857 (+) True AMCG00016290
AMCG00016292 mRNA upstream 225670 14817875 ~ 14827375 (+) True AMCG00016292
AMCG00016297 mRNA downstream 32954 15087879 ~ 15105018 (+) True AMCG00016297
AMCG00016300 mRNA downstream 311593 15366518 ~ 15367769 (+) True AMCG00016300
AMCG00016299 mRNA downstream 324399 15379324 ~ 15406751 (+) True AMCG00016299
AMCG00016301 mRNA downstream 369697 15424622 ~ 15442208 (+) True AMCG00016301
AMCG00016307 mRNA downstream 474835 15529760 ~ 15547602 (+) True AMCG00016307
TU15538 other upstream 614439 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 1416044 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 1421248 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 1425334 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 2271181 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 1429430 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 1429430 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 1429430 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2061868 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 9025092 24080017 ~ 24110182 (+) False G14057

Expression Profile