RNA id: AMCG00016301


Basic Information

Item Value
RNA id AMCG00016301
length 1314
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00016301
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15424622 ~ 15442208 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCTTCCACAGCGGATCTAATGATTAGGAATATCCTCCTGAAGCATGCTGGGAAGTACGGCTGCCAGGCTCAAACCAGTGCTGATACCTTGTATACAGAGGCTGAACTGCTTGTAAGAGgTCCTCCGGGGCCTCCAGGGATTGTGATAGTGGAGGAAATTACTGATACCACGGCAACGCTGTCCTGGAGTCGTGGAGTGGATAATCACAGTCCAATCAGCACCTATAATTTGCAGGCGAGGAGCCCATTTTCATTAGGATGGCAGACTGTGAAAACAGATCCAGACCCCGTGACTGGTGCCATGGAGTCTGCCATGGCGGTGCAGCTGAACCCGTGGGTAGAGTACGAATTCCGGGTGGTAGCTACCAACAGCATCGGAACAGGAGACCCCAGTGCCGCCTCTAGGGTGGTCCGGACTAAAGAAGCAGTCCCATCAGTGGCTCCAGCCAACGTGAGCGGAGGGAGCGGTCGACGGCATGAGCTGGTCATATCTTGGGAGCCAGTGTCAGAAGAGTTCCAGAACGGCGAGGGCTTTGGCTACATTGTGGCTTTCAGGGCCAACGGGACTCGAggctggaaagaaaaaatggtGACGTCTGCGGATTCCACAACATTCAAATACCGCGACGAGACCTTCCCCCCGCTGACCCCCTTCGAGGTGAAGGTGGGGGTCTACAACAACAAAGGGGACGGACCCTTCAGCAAGGTTGTCACAGTCTACTCCGCAGAAGGAGAGCCCCGGGAGGCCCCCTCTGAGGTGAAAGCAGCTGGTGTGTCTTCCTCAGAGATCCAGGTAGTGTGGAGGCCACCTAATCCAGGTCCAGGGAGGCCCTGGGGATACGAGGTGAACTTCTGGAAGGATATGGAGCAGGAAGAATctggagagaaaatgaaaactccTGGCAATGAAACATCCATCTTACTAACGGGGTTGGAAGGAAACACTTTGTATCACATCACTGTGAAGGGCTACAACAACATTGGCCAAGGGCCCGCGAGCATAGCTGTCCGAGCGAAAACCAAGAAATCGCCCCCAAGTCAAGCACCCAGTAATCTCATGTGGATTCAAGATGGAGATAATGTCTCCTTAGGATGGGAGCCAGTCAGATCACTTGACAACGAATCAGATGTTATGGGGTACAAGGTCCTACTTCGTCAGGAGGGCCGGAGCCACAGTGAAGTGATCGAGACAAACAGCCCGTCAGCTGTCCTGTCTCTAACAGAAGGGGGAACCTACATCATCGAGGTGCGAGCCGTCAGTGAAGGCGGGGAGGGCACGGCCAGCTCACAGATCAAAGTGCTCAAGTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15607 lncRNA upstream 641087 14780312 ~ 14783535 (+) False AMCG00016288
TU15565 lncRNA upstream 808913 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA upstream 843293 14576587 ~ 14581329 (+) True G12605
TU15543 lncRNA upstream 972868 14451510 ~ 14451754 (+) True G12591
TU15541 lncRNA upstream 975410 14448812 ~ 14449212 (+) True G12589
TU15728 lncRNA downstream 21869 15464077 ~ 15464312 (+) True G12712
TU15803 lncRNA downstream 298978 15741186 ~ 15743647 (+) True G12763
TU15864 lncRNA downstream 477375 15919583 ~ 15924725 (+) True G12816
TU15957 lncRNA downstream 1090896 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 1166510 16608718 ~ 16608985 (+) True G12896
AMCG00016299 mRNA upstream 17871 15379324 ~ 15406751 (+) True AMCG00016299
AMCG00016300 mRNA upstream 56853 15366518 ~ 15367769 (+) True AMCG00016300
AMCG00016297 mRNA upstream 319604 15087879 ~ 15105018 (+) True AMCG00016297
AMCG00016296 mRNA upstream 369697 15053045 ~ 15054925 (+) True AMCG00016296
AMCG00016298 mRNA upstream 383171 14987863 ~ 15041451 (+) True AMCG00016298
AMCG00016307 mRNA downstream 87552 15529760 ~ 15547602 (+) True AMCG00016307
AMCG00016305 mRNA downstream 190180 15632388 ~ 15644947 (+) True AMCG00016305
AMCG00016306 mRNA downstream 207943 15650151 ~ 15657395 (+) True AMCG00016306
AMCG00016311 mRNA downstream 218111 15660319 ~ 15662260 (+) True AMCG00016311
AMCG00016312 mRNA downstream 241226 15683434 ~ 15697259 (+) True AMCG00016312
TU15538 other upstream 986016 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 1787621 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 1792825 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 1796911 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 2642758 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 1042147 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 1042147 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 1042147 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 1674585 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 8637809 24080017 ~ 24110182 (+) False G14057

Expression Profile