RNA id: AMCG00016314


Basic Information

Item Value
RNA id AMCG00016314
length 3176
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00016314
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15824997 ~ 15836961 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTCCGTCACTGAAGTGAGAAAACCGAGGCAAAAAACTACCCGGAGTGAAACCCCAGCATCAGCGGCATTTCCCCGATTTACCTTGAACGAGCTCGATGCCACGGCAACGCACCTGTGACactttcttaaaacaaaaaaaagatgcataTCATGATACATGCACAGAACAGTTCATTCTGATCTGCGGATGCAACGAAGAACAGAATGTGTTGTGATTGTAAAGGACATATAGAATAAAGACTGTGACAAGTCAAGATGGACAAGATCCTGGAAGCAGTGCTGATGTCCCCACACTCCAAAGCAGTGAAGCAGGGAATGGTGAAGCGGGTGACGGAGTCGGCTGCGCAGCCTCTCGACAGGGAGCAGTGCACGGCCATGTTCAACGTGGCCACCAAGCTGTTCCTGCTGGGAGAGTCCCAGTTCAAACGGGACGCAGGCAaggaagtgctggaagccttCGCCCACCACCACCAGGGGGAATTTGAGGAATTCTTCAATGCCAGGTTTGTCCTCGACCTCCTGCAGCAGGGATACGTGCCTCTGGGGAAGAGAAGCCCTCAGATCTTCGACTACCTCCAGGTGGGCCTGCGCTATGTCGCGGAAAGCCCTTCCTCTGCAGACTTCTTCCACCTGCTGCAGATCGAGGTGCTGCGGATTATCTGCGAGCGGCCCGGCCCGGAACTGTGCGCCCGTCTCGCCAGACTGCTCAGCCGCTACCCTCAGAGCGTGCCCAGTGGGAACCTGCAGACCGTCTTCTGCCAGCAGCTCATACAGACCATCAAGCTGTTCCATTGTCAGTGCGACGCGGAAGATGACGTGGTCACCTTCCTGGAGCACGTGACCAAAACCAGCGGCATGCTGCAGAGCGTGTGGAGGACCAATGTGACCAGCATCCTGCCCTCCTTGAAGGAGCTCTTCATTGTCATCTCCTCTCCTGGAGAAGGGAGCATCGTTCCATCCAATGCGTTGGCCAGTGTGGTTCAGTTCGTGCCCCTGGAGATGATGGAGGGAGTGGTACGGAACCTCACAAATGAAAAGAACATATCTGACGCACAGATGCTGACGGCTCTCTGTAGAATGATGGAATGGCTATCATGGCCATTCACCAAGAACACAGACAAGTGGATTATCAGTCTGATGAAAGGCGTGGCGGCAGTGAAAAGATTTGCGATCCTGATTGAAGTGACTCTCACAAAAATTGAGGAGGTGTTTTCAAAGTTGTTCTACCCCATTGTGAGAGAGGGGGCCCTGTCTGTGCTGTCCTATTTGCTGCTCAGTTTTCAGCAGTCTCCTGAAGCATTTCACTTGCTGCTGCCTCAGATTCCCCAGCTGATCTCTGCTCTGTCTGCTGAGGAGTCGGACACCGCAAAGCATTGCCTGACACAGCTGCTGGAGTTAACACACTGCCTCCTGTTCCGGTTCCCTGGGTTTCCAGACCTCTACCAACCGGTCCTAGAACTCATAAAgGATCTTCCGGTCCCAAGTGAGGGGCGCATGAAGCTGCTGCTCAGCCAGAACGCCTGGGAACCTCAGAAGACTGACCAGGTTTCCTTCTGTCACAGACTTCGGCCCAAGTCCCAGACGGGGAAAACTGGGCTGGTCAACCTGGGAAACACCTGCTACATGAACAGTGTAATCCAGGCCCTCTTCATGGCCTCAGATTTCAGACACGCTGTCATGTCTTTAAAATACTGTGACCTTCTGCCTCTCATGGGGAAACTGCAGCAGCTCTTTGCTTTTCTGGAACACAGTCAGCGTCCAGCCATTTCCCCAGATAGCTTCCTGGCAGCATCCATCCCAGCATGGTTTAACCCTGGATCTCAGCAGGACTGTTCAGAGTACCTCAAATACCTGCTGGACAGACTCCAcgaagaagagaagagaggcTCCCAGAAGACAAGGACTTCTTCGTCGGCCGCTGCAGCCGATGAAAAAGGGACTCTGATCAAGAGGATGTTCGGGGGGAAGATGGTGACTAGGATCCGGTGCCTTCGCTGCCACAATATCTCCCGCCGGGAGGAGGCCTTCACTGACCTGTCCTTGGCCCTGCCTCCACCCAATCACAGCCTGGAGAGGAGTTTCATCATCAGTCCATCTCAACCCATGGTAGAAACGATCGGTCCATCACGGCTGAGTCCTTCCAAAGCTCAGAGACAGACGTTTCCATCAGTCAGGAGCGACGGAAAGCACGAGGCATCCGAAGAACGTGGTGTCAGGATCGTTCCTGTGGAAACTGTGGGTCACACTGATAGAGCTGCGTCTCTCGATTCAAACAAAGGGCTTGACCACACTTTGTCTTCAGGCACCTCTGGAGAACAGACCAGAACTTCTGAAGCATCCCTTTCAGTTCCTGACCTGATCAATTTCTTTTTATCCCCTGAAATGTTGACTGGGGAGAACAAGTACCATTGCCAGAAGTGCTCCTCTTTGCAAAACGCTGAGAAGGTAGTAGAAGTGACATACGGGCCTCACTACCTCATCCTGACTCTGCTGAGGTTCTCCTTCGATCTACGGACCATGAGGAGAAAAAAGATCCTGGACAACGTGTCCATCCCGTTAGTTTTAAAGATCCCGGTGAGGGTCGCCTCAAGGGAACCAGAGTCAATCGGACCTGGAAACGTGGGTTCAGAGTCCAGCACGGAAGGCAGTGCATATGTCTCTATGACCTATGACCTGGGCAGTGTGGTAGTCCACTCGGGATTGTCGTCTGAGAGTGGACACTATTACTGCTACGCCAGGGAGTGTGACGGTGGGGCGTCTGAGAAACAGTCTGACAGGGACGCCGATGCACAAATGTCGGGCCCTCAGCGCACTAGTGAAAACCAGTGGTTCTTATTTAATGACACCTGGGTCTCCTTTTCCTCCTTTGAATCCGTGACCAATGTGACCACACACTTTCCCAAAGACACAGCCTATGTCATGTTCTACCGGCTGAGGCCTTCTCAACACgcagaagcagagagagagtgcattTTAGATGCTCATAAATTACATGGAGGGAAGTCACTTGATAAAGAGCTGAGTGAGGCAATTACGAAAGATAACACTCTGCATTTACAGGAACAGGAAAGAGAGGTGAGACACAGAGCATCTCTATCCCCTTCAACAGCCGAGCCGCCTATCTGGCTGAAGAGACCCAGAAGTCACAAGGAGAAAATCCAAcacaaaaagtaa

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11854 USP35_38; ubiquitin carboxyl-terminal hydrolase 35/38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15803 lncRNA upstream 81350 15741186 ~ 15743647 (+) True G12763
TU15728 lncRNA upstream 360685 15464077 ~ 15464312 (+) True G12712
TU15607 lncRNA upstream 1041462 14780312 ~ 14783535 (+) False AMCG00016288
TU15565 lncRNA upstream 1209288 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA upstream 1243668 14576587 ~ 14581329 (+) True G12605
TU15864 lncRNA downstream 82622 15919583 ~ 15924725 (+) True G12816
TU15957 lncRNA downstream 696143 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 771757 16608718 ~ 16608985 (+) True G12896
TU15972 lncRNA downstream 786722 16623683 ~ 16623967 (+) True G12901
TU15977 lncRNA downstream 835171 16672132 ~ 16672496 (+) True G12906
AMCG00016313 mRNA upstream 99152 15716894 ~ 15725845 (+) True AMCG00016313
AMCG00016312 mRNA upstream 127738 15683434 ~ 15697259 (+) True AMCG00016312
AMCG00016311 mRNA upstream 162737 15660319 ~ 15662260 (+) True AMCG00016311
AMCG00016306 mRNA upstream 167602 15650151 ~ 15657395 (+) True AMCG00016306
AMCG00016305 mRNA upstream 180050 15632388 ~ 15644947 (+) True AMCG00016305
AMCG00016324 mRNA downstream 557010 16393971 ~ 16403344 (+) True AMCG00016324
AMCG00016322 mRNA downstream 593129 16430090 ~ 16435049 (+) True AMCG00016322
AMCG00016323 mRNA downstream 609667 16446628 ~ 16461315 (+) True AMCG00016323
AMCG00016330 mRNA downstream 628490 16465451 ~ 16483942 (+) True AMCG00016330
AMCG00016329 mRNA downstream 647557 16484518 ~ 16485080 (+) False AMCG00016329
TU15538 other upstream 1386391 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 2187996 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 2193200 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 2197286 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 3043133 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 647394 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 647394 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 647394 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 1279832 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 8243056 24080017 ~ 24110182 (+) False G14057

Expression Profile