RNA id: AMCG00016324


Basic Information

Item Value
RNA id AMCG00016324
length 1551
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00016324
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16393971 ~ 16403344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCAAGAAGCAAAAGTTATTTTCACTTTAACTTTTAAGGAAGCATCTGAGCTTAAGGACGGCATCAACctgaagagaaataaagaagATGGCAAATGTTACATTATCTACAAAGACAAGGAAATGTTGCGAGCATGCAAGAATCAGTGCAAACATCAAGGAGGACTGTTTATTAAAGACATTGAGGACATAAACAGACGAACAGTCCGCTGTACCAAACATTACTGGAAACTGGATGTTGCTACTATGAAATATGTAAATCCACCTGACAGTTTTCATCAAGAAGAGCTTGTTGTTGAAATGGATGAAAGTGGGGGGATTCAACTTATAGAACTGAGCCCCCCTGATCCTTGGCTTTCTGACCCTAGGACTCCTGAAGAGCTTCAATTTGGAGAAGTGCAGATTAACTATCTTACACATGCATGCACGGAGCTCAAACTAGGCAGTAAGAGGATGCTGTTCGACCCCTGGCTTACAGGCCCCGCATTTTCAAGAGGCTGGTGGCTGCTGCATGAGCCCCCAGAAAACTGTCTGGAAACATTGTGCCGTGCTGATTTAATATACATAAGTCACTTGCATGCTGACCATCTCAGctatcccactttaaaaatactttcagaAAAGCGTCCTGACATCCCAGTATTTGTTGGCAATACCTCAAGGCCAGTGTTTTGGTATCTGGACAGAAGTGGAGTAAATTTAACTAACATCAATGTGGTCCCTTTTGGAGTGTGGCAAGAGGTAAGCAGTCACATGATTCTGAACACTGTAGACTGCACACAACCAAATGGAGGGATCCTGCCCCGCAATGTGGATGTAATGATGAGTGACTTTGCAGGAGGGGCTGCTGGATTCCCCATGACTTTCACAGGAGGGAAGTACACTGAGGAATGGAAAGCAAACTTTATAAAGACTGAAAGAAGAAAACTGCTCAACTACAAGGCACAGCTGGTGAAATCCCTACAACCCAGAGTATACTGTCCATTTGCAGGGTATTTTGTAGAGGCTCATCCATCTGACAGGTATATAATggaaacaaacctaaaaaacaACCCTGAGGAGCTCAACAAGCTGATCAATAAGCTAGAGCCTTCTATTACTACATGGACACCGAAACCAGGAGCAGTCCTAGACCTCGCCCGAATCCTGAAAGACCCTGCAGATAGtaaGGCCATCATCAATCCCCCACCTTCGACAAAACTCTACAAAGACAGCTGGGAGTTTGATCTTTATCTGGCTGAGATCAACTCTGCGATCGATTCACAGATATTCCAACACAAAGAGTGGATTATTTTTTACTATAATTGGGCCGGGTTTAGAGAATACAATCTAGTCATAAGGATTAAGAACAGAGTTGGGGTGATACGCCACGTGGTGAAACATGGCATCTTGTGGGATGATCTTTACATTGGCTTCCAGAACCGACTAAGCAGAGACCCAGACATTTACCACCACCAGTTCTGGAATCATTTCCAAACTAATTTGCCACTGACCTCACCAGATTGGGACTTATTCCTGGACCAGATGAATGTGGACCCTGAGAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15864 lncRNA upstream 469246 15919583 ~ 15924725 (+) True G12816
TU15803 lncRNA upstream 650324 15741186 ~ 15743647 (+) True G12763
TU15728 lncRNA upstream 929659 15464077 ~ 15464312 (+) True G12712
TU15607 lncRNA upstream 1610436 14780312 ~ 14783535 (+) False AMCG00016288
TU15565 lncRNA upstream 1778262 14576587 ~ 14615709 (+) False G12605
TU15957 lncRNA downstream 129760 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 205374 16608718 ~ 16608985 (+) True G12896
TU15972 lncRNA downstream 220339 16623683 ~ 16623967 (+) True G12901
TU15977 lncRNA downstream 268788 16672132 ~ 16672496 (+) True G12906
TU15978 lncRNA downstream 271549 16674893 ~ 16675189 (+) True G12907
AMCG00016314 mRNA upstream 557010 15824997 ~ 15836961 (+) True AMCG00016314
AMCG00016313 mRNA upstream 668126 15716894 ~ 15725845 (+) True AMCG00016313
AMCG00016312 mRNA upstream 696712 15683434 ~ 15697259 (+) True AMCG00016312
AMCG00016311 mRNA upstream 731711 15660319 ~ 15662260 (+) True AMCG00016311
AMCG00016306 mRNA upstream 736576 15650151 ~ 15657395 (+) True AMCG00016306
AMCG00016322 mRNA downstream 26746 16430090 ~ 16435049 (+) True AMCG00016322
AMCG00016323 mRNA downstream 43284 16446628 ~ 16461315 (+) True AMCG00016323
AMCG00016330 mRNA downstream 62107 16465451 ~ 16483942 (+) True AMCG00016330
AMCG00016329 mRNA downstream 81174 16484518 ~ 16485080 (+) False AMCG00016329
AMCG00016334 mRNA downstream 102953 16506297 ~ 16520198 (+) True AMCG00016334
TU15538 other upstream 1955365 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 2756970 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 2762174 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 2766260 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 3612107 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 81011 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 81011 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 81011 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 713449 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 7676673 24080017 ~ 24110182 (+) False G14057

Expression Profile