RNA id: AMCG00016326


Basic Information

Item Value
RNA id AMCG00016326
length 1329
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00016326
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16419874 ~ 16425645 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGATCACTTTGGCTTTGCTGAAGATGCAACATTCAAGCAGAGATACCTGGTGGCTGACCAGCATTGGCACAAAGATGGAGGGCCAATCCTGTTTTACACTGGCAATGAAGGCGACATCACCTGGTTCTGCAATAACACAGGTTTCATGTGGGATGTGGCGGAGGAGCTTGGTGCAATGTTAGTTTTTGCAGAACACAGGTATTACGGAGAGTCCCTGCCATTTGGGGATAAGTCCTACAGTGATGCAAAACATCTGAATTTCCTGAGCTCAGAGCAGGCTCTTGCAGACTTCGCCGTGCTGATCGAGGGGTTGAAGCGCACAGTTCCAGGGGCCCAACACAGCCCTGTCATCGCCATTGGAGGATCCTATGGGGGAATGCTGGCCGCCTGGTTAAGAATGAAGTATCCACACGTCGTTGTGGGTGCCCTGGCTTCCTCTGCTCCGATATGGCAGTTCACAGACCTGGTACCCTGTGGTGATTTCTACAAGATTGTGACTCAGGATTTCTCCATGAGTGGGATGGGCTGCTCTGAGAGCATTAGCAAGTCATGGAAGGCGATTGACAACATCTCCTCAACAGACGATGGACTGCAGTGGCTCTCCAGTGCGTTTAAGCTCTGCTCTCCACTCAGAAAGAAGGAGGACGCTGTTGCTTTCAAAGCATGGCTTCAAGAGACCTGGGTCAATTTGGCAATGGTCGACTACCCTTATGAAGCCAACTTCCTGCAGCCCCTGCCAGCTTGGCCAATTAAGGTGGTATGTCAGTTTCTGAAAAATCCATATCGGCCAGAGAAAGATTTGCTGAACGGTATTTTCCTGGCAGTGAATGTTTACTACAACCACACAGGAAACGCACCATGCCTCAATATTTCACAAACTGCAACTGGAAACCTGGGCTATATTGGCTGGTACTATCAGGCCTGTACAGAAATGGTGATGCCCATGTGCACAGATGGCAGCAGTGACATGTTTGAGCTGCAGTCGTGGGATTTCAAGGCGTTCTCTGACGAATGTTACAGCCTGTTTGGCGTGCGGCCCCGTGCAGACTGGGCCACTACTGTTTATGGAGGGAAGAACATCAGCTCTCACAGCAACATCGTCTTCAGCAATGGAGGCCTGGATCCCTGGTCAGGTGGTGGGGTGACTCGGAACATCTCAAAGTCAGTTGTTGCCATCATGATCCCGGAAGGGGCTCATCACTTGGATCTGCGCTACAACAATGCCTACGACCCAAAATCTGTGCTCCAAGCCCGGGCCTTGGAGGTGAAGTACATGACCGAGTGGATTAAAGAGGCTTCAGAAAATCCCAAATGTCCACATAATCAA

Function

GO: NA

KEGG:

id description
K01285 PRCP; lysosomal Pro-X carboxypeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15890 lncRNA downstream 196146 16223485 ~ 16223728 (-) True G12838
TU15862 lncRNA downstream 579082 15837835 ~ 15840792 (-) True G12814
TU15860 lncRNA downstream 583406 15835194 ~ 15836468 (-) True G12812
TU15859 lncRNA downstream 584792 15834822 ~ 15835082 (-) True G12811
TU15858 lncRNA downstream 590307 15829355 ~ 15829567 (-) True G12810
TU15928 lncRNA upstream 41972 16467617 ~ 16467819 (-) True G12867
TU15929 lncRNA upstream 42328 16467973 ~ 16468272 (-) True G12868
TU15930 lncRNA upstream 44966 16470611 ~ 16470959 (-) False AMCG00016327
TU15965 lncRNA upstream 170033 16595678 ~ 16596220 (-) True G12894
TU15968 lncRNA upstream 183073 16608718 ~ 16608944 (-) True G12897
AMCG00016328 mRNA downstream 10596 16408355 ~ 16409278 (-) True AMCG00016328
AMCG00016318 mRNA downstream 358156 16057109 ~ 16061718 (-) True AMCG00016318
AMCG00016320 mRNA downstream 389406 15921097 ~ 16030468 (-) True AMCG00016320
AMCG00016321 mRNA downstream 517054 15890260 ~ 15902820 (-) True AMCG00016321
AMCG00016319 mRNA downstream 570762 15841259 ~ 15849112 (-) True AMCG00016319
AMCG00016325 mRNA upstream 9847 16435492 ~ 16445488 (-) True AMCG00016325
AMCG00016327 mRNA upstream 45052 16470697 ~ 16475170 (-) True AMCG00016327
AMCG00016332 mRNA upstream 60816 16486461 ~ 16486880 (-) True AMCG00016332
AMCG00016331 mRNA upstream 78571 16504216 ~ 16508407 (-) True AMCG00016331
AMCG00016333 mRNA upstream 150964 16576609 ~ 16586666 (-) True AMCG00016333
TU15638 other downstream 1627905 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 2860690 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 3549314 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 432896 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 432896 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 432896 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 2665594 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3709552 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile