RNA id: AMCG00016330


Basic Information

Item Value
RNA id AMCG00016330
length 3376
RNA type mRNA
GC content 0.47
exon number 25
gene id AMCG00016330
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16465451 ~ 16483942 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCACCGCATCGATGCCATTAGTCCGCAAGAAGAAAGCCCTGGCCACCGTACACGAAGCGGTGAGGGCAGCCGACGTGGAAGAGCTGGCCATGATGGTGAAGAAAGGAGCCAGTTTAAATGAAGTTGACCCAGAGCACAAATTCACCCCTCTGCACTGGGCTGCACATGCTGGGAGCCTGGAGTGCCTGCACTGGCTCCTGTGGCATGGCGCTGATACTACATACACAACTCCCCAAGGCTGGACACCTGCCCATTTAGCTGCTATAAGGGGCCAGGATTCGTGTATGCAGGCTCTGGTTATGAATGGTGCCAACCTGACCGCCCAAGACAACAGGGGTTGCACTCCAGCACACCTGGCAGCCGCTCATGGACACTCGTACACACTGCAGACAGTCCTGCGCATTGGAGTGGACTCCAACAGTGCTGATAAGAATGACTGGAGGCCGGCACACTATGCTGCCTTCCATGGGAGACTTGGCTGTTTACAGTTTCTTCTTAAGTGGGGAGCCAATGTGGATGATGTTGATAAAAATGGGAATACGCCAGctcATTTAGCAGCAGCCGAAGGACatctgcattgttttaaattcctGGTTTctcagggagtgagtgtagccCACACACTGGGAGCCAGGAACGACCAGGGAGAATTGCCCAGAGATCTGGCCCAGAGGTTTTACAAGCAGCCGATTGTACAATACATCGAAGCTGTGGAAAACCAGAGTGACTTCCGTGATGAGCAAGAAAACCTGGCATTCCCAGCACATGTGGCTGCACTCAAAGGGGACCTGGACATGCTGCGGAAACTGGTTGAATGTGGCATCATAAACATCAATGAGCGAGATGACAAGGGTGCCACTCCTATCCATAAAGCGGCTGGACAGGGCCATCTGAACTGCTTACAGTGGCTTCTGGACATGGGTGCTGATCAAAACATCACAAACGATGCTGGGGAGACACCAAAGGATATTGCAAAGAGGTTTGCTCAGCTGGCTGCAGTGAAGCTTCTCGGAGGAGGGGGTCCGGAGGAAGACTCTGACGAGGAACTGGATTGCACAGAGCCATCTTTTTTCGAAAGACATGGTGTGGAAGGAAGCACAGACAGCTTTGAAGATGTCAATCTAAGTGTCACTCAGAAAAAGGAGGGTAGAATGCGAGCGTACAAAAAGATTGAGGAAATTGAACGTCTGCTAGAGATTGCAAAAAGTAACTACAGGCAGCTGGGAGGGATCCTCGAGGAAGAccgaaaggaaaggaaagaacaAAGAGAAGCCGCAAGAACCATCAAAGAGCTTCAGGCCCAGCTCGAGTATGAGAGAGTGCGCAGAGAGAAGCTGGAATGCCAGCTGGATGACTACAGGGCAGAGATTGGGCACCTCAATAAGTGCCTGCAGAATCTACAAGCAGCAGCCGAAGCAAAACCTCAAGAACAGATCaaggagaaaaagaaatcaaagaaaacTAGAAAGAATGATGTTGGGGGTGTGTTTagtaCCTCATTCTCAGCCCGCAGGTTTGAAAACTCGCTTTTCTCCAAAATCACCATGTCCTTCCTTATTGAATCCAGcCATTCTACGGATTTTGAGGTACACAGAAACTGGCTTGCAATTACACACAGTTTAGCAGTCTCCAAATGGTACTATGAAgaCACCTCTGAATGGACTTTAGATTATCCTCCATTGTTTGCTTGGTTTGAATATGGCCTGTCCCACATTGCGAAGTATTTTGACAAAGAAATGCTGGTTGTGACCAATTTGAATTATGCCAGTCCTGCCACTGTCATCTTTCAGCGGCTCTCGGTCATCTTTACTGACCTTCTCTTCATTTATGCCGTTAAAGAgtgtttaaaatgtgtgagaagaaataaagaacCCAAGGATCTCCTGGAGAAGCCAGTGTTTGTGttggctgtgctgctgctgtgcaaCTTTGGGCTCCTCATCATTGATCACATCCATTTCCAATACAATGGCTTCTTGTTTGGCCTGCTGCTTCTCTCAGTTGCCAGGCACTTCCAGAACAGACACCTTGAAGGAGCTCTACTGTTTGCGTTGCTGCtgaattttaaacatatttacctGTACATAGCTCCTGCATATGGAATCTACCTCCTGCGTTCTTTCTGCTTCACCCAGAACAATCCAGatgGATCAATAAAGTGGAGGAGTTTAAGTTTCACTCGTTTTGTGGTTTTGGGAACAATTGTGTGCTCCGTCTTTGCTCTGTCCTTTGGGCCATTCATTGCTATGGGTCACCTTCCTCAGGTGCTGTCCAGACTCTTTCCCTTCAAGAGAGGACTGTGCCATGCCTACTGGGCACCCAACTTCTGGGCATTGTATAATGTGGCAGACAAAACTCTGTCCGTCTTAGGGGTGAAGCTACAATGGATTGAAATGGACAAGCTGCCCAAGGCCTCAATGACTGGGGGGTTAGTCCAGGAATTTCAGCACTCTGTCCTTCCCTCTGTGACTCCGTTAGTGACCCTGGTTTGCACCATCACTTCAGTCCTTCCTGCAGTTGTCTGTATTTGGCGTAACCCTCAGGGACCCCGAGGCTTTCTTCGGTGTGTGATTATCTGTGCTTTGGGATCTTTCATGTTTGGATGGCATGTACATGAAAAGGCTATTCTAATGGCCATCCTTCCATTGAGTATCTTGGCTGTGGAAAGCCGAAGAGATGCTGGAATATTTGTGATATTGGCAACCACAGGCCatttctccctctttcccctTCTCTTCACTGCTCCAGagctACCAATCAAAATCCTTCTCATGTtaatgtttacagtgtacagtttGACCTCACTAAATATGTTGTTCCGAAAAGAAGGCTGCCTGATTAATTGTGTGGAGGTAGCCTACCTCACTGGACTGGTCCCACTGGAGATCTTCTGTGAGCTTGTCTACCCTCTGACCCACTGGCAGCAAACCTTGCCCTTCATTCCTCTGCTGCTGACCTCTGTGTACTGTTCATTGGGAGTTACTTATTCCTTCATTAAGCTCTATGTCTCAATGTTCACAAGGCCAAAGGAGTCAGACAAGAATAAACGTCAGTGAAGAGACAAAGATGCAACTCAGGGTCCAAGCAAGCGAGTGCCCACTACATACTGTGTGGGCACGAGACTGCTTTATAATCCCAGACACAGTGGTATGAATGCTATCTGTATGtgcacacaaaatgtatatttttataaaataaaatcaggaatATTATTAATGGATGCAtgtgttcttttgttttgttgtatgaAATACATGCTTTTTTATGCAgactttttattgttgttgttttactttttacatctttttttaatccagttCAACTGTTTTTAAGTACCAGCTAACCTGTGCCATAGAAATAAAGTGAGTTCAC

Function

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0046527 glucosyltransferase activity molecular_function

KEGG:

id description
K03849 ALG8; alpha-1,3-glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15864 lncRNA upstream 540726 15919583 ~ 15924725 (+) True G12816
TU15803 lncRNA upstream 721804 15741186 ~ 15743647 (+) True G12763
TU15728 lncRNA upstream 1001139 15464077 ~ 15464312 (+) True G12712
TU15607 lncRNA upstream 1681916 14780312 ~ 14783535 (+) False AMCG00016288
TU15566 lncRNA upstream 1884122 14576587 ~ 14581329 (+) True G12605
TU15957 lncRNA downstream 49162 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 124776 16608718 ~ 16608985 (+) True G12896
TU15972 lncRNA downstream 139741 16623683 ~ 16623967 (+) True G12901
TU15977 lncRNA downstream 188190 16672132 ~ 16672496 (+) True G12906
TU15978 lncRNA downstream 190951 16674893 ~ 16675189 (+) True G12907
AMCG00016323 mRNA upstream 4136 16446628 ~ 16461315 (+) True AMCG00016323
AMCG00016322 mRNA upstream 30402 16430090 ~ 16435049 (+) True AMCG00016322
AMCG00016324 mRNA upstream 62107 16393971 ~ 16403344 (+) True AMCG00016324
AMCG00016314 mRNA upstream 628490 15824997 ~ 15836961 (+) True AMCG00016314
AMCG00016313 mRNA upstream 739606 15716894 ~ 15725845 (+) True AMCG00016313
AMCG00016329 mRNA downstream 576 16484518 ~ 16485080 (+) False AMCG00016329
AMCG00016334 mRNA downstream 22355 16506297 ~ 16520198 (+) True AMCG00016334
AMCG00016337 mRNA downstream 73296 16557238 ~ 16563218 (+) True AMCG00016337
AMCG00016346 mRNA downstream 252162 16736104 ~ 16740028 (+) True AMCG00016346
AMCG00016340 mRNA downstream 299524 16783466 ~ 16786942 (+) True AMCG00016340
TU15538 other upstream 2026845 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 2828450 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 2833654 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 2837740 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 3683587 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 413 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 413 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 413 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 632851 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 7596075 24080017 ~ 24110182 (+) False G14057

Expression Profile