RNA id: AMCG00016333


Basic Information

Item Value
RNA id AMCG00016333
length 723
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00016333
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16576609 ~ 16586666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCTGTTCGTCCTGAGGAGCAAGCCCTCTTTCAGAGAGACCCCCCGCTACATCCTGTTCACCCACATGCTCCTCAACGACGCCATTCAGCTGCTGACCAGTATGTTACTGTACACCCTTGCCTTGCTGTATCTGTGCCTTGTCAGGGCTGTGTGTGCAGTCATTGTACTACTGTCCAGCACCACCTTCTATAACGCACCTCTAAACCTTGCTGTGATGGCTCTTGAACGCTACATAGCTATCTGCTTCCCACTGCGGCACAGTGAGATGGCTACCCCTCAAAGAACTGGAGTTGCCATTACTGTGGTTTGGTTTCTTGGCTCTGTAAACCACCTCATTGATATATTTGTTGCTCTGATCACAGAACCCTCTTTTTTACTGACACCTGTGTATTGCACACGTGAACagattttcatgtttaaatggcaGGCCGATGCCTATCAAGGAttcacagctttttattttgtgtctgtggGACTCATTCTGGTGTTCACGTATGTTGCAATCATGCTGGAGGCCAGGTCTGTCTCCTCTGACAAAGCTTCAGTGACCAAGGCCCGCAATACAGTGTTACTGCACACAATCCAGCTGTGCCTGTGCCTCACCTCCTTCCTGTACGGAGTGATAGAAGCCCTGCTGGCAAGGATGGATGCGTCTGTTTTCATTCACCTGCGCCAGGATCAGCTTTGCCACCTGGCCCGAAACTGCGGCCACAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15930 lncRNA downstream 105650 16470611 ~ 16470959 (-) False AMCG00016327
TU15929 lncRNA downstream 108337 16467973 ~ 16468272 (-) True G12868
TU15928 lncRNA downstream 108790 16467617 ~ 16467819 (-) True G12867
TU15890 lncRNA downstream 352881 16223485 ~ 16223728 (-) True G12838
TU15862 lncRNA downstream 735817 15837835 ~ 15840792 (-) True G12814
TU15965 lncRNA upstream 9012 16595678 ~ 16596220 (-) True G12894
TU15968 lncRNA upstream 22052 16608718 ~ 16608944 (-) True G12897
TU15973 lncRNA upstream 37017 16623683 ~ 16623906 (-) True G12902
TU15986 lncRNA upstream 163053 16749719 ~ 16749919 (-) True G12915
TU15992 lncRNA upstream 204757 16791423 ~ 16791669 (-) True G12921
AMCG00016331 mRNA downstream 68202 16504216 ~ 16508407 (-) True AMCG00016331
AMCG00016332 mRNA downstream 89729 16486461 ~ 16486880 (-) True AMCG00016332
AMCG00016327 mRNA downstream 101439 16470697 ~ 16475170 (-) True AMCG00016327
AMCG00016325 mRNA downstream 131121 16435492 ~ 16445488 (-) True AMCG00016325
AMCG00016326 mRNA downstream 150964 16419874 ~ 16425645 (-) True AMCG00016326
AMCG00016335 mRNA upstream 825 16587491 ~ 16752990 (-) True AMCG00016335
AMCG00016336 mRNA upstream 170749 16757415 ~ 16774872 (-) True AMCG00016336
AMCG00016344 mRNA upstream 224370 16811036 ~ 16822370 (-) True AMCG00016344
AMCG00016343 mRNA upstream 274514 16861180 ~ 16864392 (-) True AMCG00016343
AMCG00016345 mRNA upstream 279652 16866318 ~ 16870002 (-) True AMCG00016345
TU15638 other downstream 1784640 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3017425 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 3706049 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 271875 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 271875 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 271875 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 2504573 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3548531 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile