RNA id: AMCG00016334



Basic Information


Item Value
RNA id AMCG00016334
length 1094
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00016334
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16506297 ~ 16520198 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


attttgatCTAGGTGATGCTTTACATGACTTTGGAgTTTTCCTCTATGTGAACTGTCTCATGATCTTCACATTCTTCAAAAAAGAAGCTTTTCGCACAAATATGATTCAAAACACCACGGACAATAACAATGTCAGCATTGTGACTTCCACTCTACCAGTGTTGAATGTGAAGATGTGGATTGTACAGGTACTGGTTGTGTTTTTCCTCTATGTGAACTGTCTCATGCTATTCACCTTCTTCAAGAAGGAAGCTTTCCGGACAACCACGCggtacattttgtttgcacaAACACTACTTGTGgactctttctttcttgtgcTGATAGATATTGTCATTCTGTTGACTTATTTCTATGACCTAGTTCCTGTAGgactttgcattttattgtgcGTGTTTATAGAAATTCTTACAAATACCACACCAATGAGCATCACTGCAATGTGTCTGGAACGCTACATTGCCATCTGTATGCCACTGAGACACGCAGATATTTCTACCACAAGCAGGCTGATAAAAGGAATTCTTATTATTTGGGCTCTGGGTTCCTTTTATGCCTTTATCGATCTCTGCATTCTTGTTGCATTTACATCTGCAAGTTTTTATACAGAAAAAACTAAGTGCAGTTATGATATAATACTTCAGAAGGAATGGCAAACCCAAATGAGGATAATACATTGCCAGGTGGATTTCCTGATCATGGGGGTGATCCTTGTATTctgttatatacaaataatgaaagcaGCTAAATCTGCTTCAGTGGATAACAAGAAATCGTCATCCAAAGGCACcaaaacattgcttttacatTCACTGCAGTTGCTCCtctgtttaattgaattgtggTGCCCATTTATAGAAATGTCTGTTCTGCACATAAACTTGCAAATGTTCATATCTGTAagatatttcaatttcattGCTTTTACATTAGCTTCCAGGTGGGAGTCCCGGAAGGGGCATCATGGCGGCGGCCTGAACCCTCTGGGCGTGCATCCCGGCGTGCTCGAGGTGCAGGCCCCCAGCCTGGAGAGGGAGGACCAGTCCCTCTCCAAAGCGGACGGTGCAGGCCCAGAGATCAAGCAGGCTTCCAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15864 lncRNA upstream 581572 15919583 ~ 15924725 (+) True G12816
TU15803 lncRNA upstream 762650 15741186 ~ 15743647 (+) True G12763
TU15728 lncRNA upstream 1041985 15464077 ~ 15464312 (+) True G12712
TU15607 lncRNA upstream 1722762 14780312 ~ 14783535 (+) False AMCG00016288
TU15566 lncRNA upstream 1924968 14576587 ~ 14581329 (+) True G12605
TU15957 lncRNA downstream 12906 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 88520 16608718 ~ 16608985 (+) True G12896
TU15972 lncRNA downstream 103485 16623683 ~ 16623967 (+) True G12901
TU15977 lncRNA downstream 151934 16672132 ~ 16672496 (+) True G12906
TU15978 lncRNA downstream 154695 16674893 ~ 16675189 (+) True G12907
AMCG00016329 mRNA upstream 21217 16484518 ~ 16485080 (+) False AMCG00016329
AMCG00016330 mRNA upstream 22355 16465451 ~ 16483942 (+) True AMCG00016330
AMCG00016323 mRNA upstream 44982 16446628 ~ 16461315 (+) True AMCG00016323
AMCG00016322 mRNA upstream 71248 16430090 ~ 16435049 (+) True AMCG00016322
AMCG00016324 mRNA upstream 102953 16393971 ~ 16403344 (+) True AMCG00016324
AMCG00016337 mRNA downstream 37040 16557238 ~ 16563218 (+) True AMCG00016337
AMCG00016346 mRNA downstream 215906 16736104 ~ 16740028 (+) True AMCG00016346
AMCG00016340 mRNA downstream 263268 16783466 ~ 16786942 (+) True AMCG00016340
AMCG00016339 mRNA downstream 274099 16794297 ~ 16807272 (+) True AMCG00016339
AMCG00016338 mRNA downstream 302719 16822917 ~ 16849192 (+) True AMCG00016338
TU15937 other upstream 20294 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 20294 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 21149 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 2067691 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 2869296 13635442 ~ 13637001 (+) True G12351
TU16114 other downstream 596595 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 7559819 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 8014820 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 8487764 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 8613000 25133198 ~ 25133879 (+) True G14361

Expression Profile