RNA id: AMCG00016339


Basic Information

Item Value
RNA id AMCG00016339
length 1937
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00016339
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16794297 ~ 16807272 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTGAATCCAGCATGGGAGATGGTGCCTGTAACGACGCCCGTGCATTCCTAATTTTGAATTTAACGAAGCAAAAGTGCgacaatatatattcaattaagcTGCACATGTGTTTTTACTTGTGAAAATGATTTACCGTCTGCATGTCAGATTGGGTGGAATAGTTACATGTCTGGAAATGCTCAGTGTTGTGGCACTTATGATCCTGACTCTGTTGCCTCCGTCTCTCAGTGAAATGTACACTTCTGTGGAGAATGTGCAACGAGCTTTTGCTGCGGAAAAGGAGCTTCTGACCCATTTAAGGACCTACATTGAAGATGAATCACTAAGATTGAACGACGTCAAGAGGTTCTATGAAAAGGTGTCTGGTTTGCACAGTCATGTATACCACAGCTCAGTGACCGCAATGGCTAACCCCCTGGTGGCGTATACACTGATTAAGAGACTACAGTCTGAGTGGCTCAATGTGGTCTACAGCAACGAAGCCCAAGAGAACTCCCAAGCCTTCAGGTCAGCCTTTGAGCAAGAAGAGAGTCAGCGGCCGAAGTTTGAGGATGTGGAGGGGGCTGCCAAGGGCTTGATGAGGCTCCAGGATGTGTACTCTCTCTGTGTGGGGGGCCTTGTGAACGGACACTTTCAGAGAGTCACTGCAGGCCAGATGGTGGACATTTACAGACCAGCCATCTCCATCCACCTGTCTGGAGATGACTGTTTCCAAGTAGGGAAGGTGGCGTATGAGATGGAGGATTACTATCACTCGGTGCAGTGGCTGGAAGAGGCAGCCCATCTCTTTCGTGGCGTGCAGGGTGCCTGGATCCTTGAGGATGAGGGGAACCTGGAGGACACTCTGGACCACTTGGCCTTCTCTCACTTCAAGACAGGAAACGTCTCCTATGCTCTGACTCTCTCCCAGGAGCTCCTGCACTATGATCCTTCAAACAAACGGGTTTACCGAAACATTGAAAAGTATGAGAAGCTCCTCTCGGCGTCTCCAGCTATAGATATCCGTGAAGTTGTACTACAGAGACCTAACACCACGTATCTGCAGACCAGAAACACCTATGAATGGCTGTGTCAGACCTTGGGATCACAGCCAAGACATTATGAAAACCCCAGGCTCTTCTGTGATTATTTTACTAATGGTGACTCAAGTCTGATCCTCAAGCCAATGAGACGAGAGGTCCTCAGCCTCCAGCCATATGTGGTTTTGTATCACAGCTTCGTCAGTGACTTGGAGGCAGAGAGCATCAAGGAATCGGCTCAACCTGGACTGAGGCGATCTGTGGTGGCTTCCGGCGATAAGCAGGCCACAGCGGACTACCGCATCAGTAAGAgTGCTTGGCTGAAGGACACAGCGCACCCTGTGGTGGGGAAGCTGGACCTGCGCATCACAGCGCTGACCGGGCTCAACCTGCAGGTTCCATATGCAGAATACCTCCAGGTGGTGAATTATGGGATTGGTGGACACTATGAGCCTCATTTCGACCATGCCACGTCGGATTCCAGTCCACTGTACAAGCTCAAATCCGGGAATCGCGTGGCAACATTTATGATCTATCTCAGCTCTGTGGAAGCAGGTGGATCAACAGCCTTTATCTATGCCAACTTCAGTGTTCCAGTAGTTAAGAACGCAGCCCTGTTCTGGTGGAATCTGCACAGGAATGGTCAAGGCAACGGGGACACTCTCCACGCTGGCTGCCCAGTCCTGGTTGGAGATAAGTGGGTGGCCAACAAGTGGGTACATGAGCACGGCCAGGAGTTCCAGAGACGCTGCGGCTCCAATCCAGACGAGTGAGGAGGAGACTGGGAGGCGGTGGGACCGGTTGGAGTACAAGAACCATCCTTAGAGCTGGAGCTGTGTGGGaacgggggaggggggaggacaCGGCTTCGGACAAGACTGCCATGCTGATTGGAGGGGCCTGCTGGAAGAGGGG

Function

GO: NA

KEGG:

id description
K00472 P4HA; prolyl 4-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15978 lncRNA upstream 119108 16674893 ~ 16675189 (+) True G12907
TU15977 lncRNA upstream 121801 16672132 ~ 16672496 (+) True G12906
TU15972 lncRNA upstream 170330 16623683 ~ 16623967 (+) True G12901
TU15967 lncRNA upstream 185312 16608718 ~ 16608985 (+) True G12896
TU15957 lncRNA upstream 260916 16533104 ~ 16533381 (+) True G12886
TU16002 lncRNA downstream 8305 16815577 ~ 16816331 (+) True G12929
TU16052 lncRNA downstream 69073 16876345 ~ 16876902 (+) True G12966
TU16121 lncRNA downstream 326042 17133314 ~ 17133530 (+) True G13019
TU16123 lncRNA downstream 336338 17143610 ~ 17146998 (+) True G13021
TU16296 lncRNA downstream 790078 17597350 ~ 17599581 (+) False AMCG00016379
AMCG00016340 mRNA upstream 7355 16783466 ~ 16786942 (+) True AMCG00016340
AMCG00016346 mRNA upstream 54269 16736104 ~ 16740028 (+) True AMCG00016346
AMCG00016337 mRNA upstream 231079 16557238 ~ 16563218 (+) True AMCG00016337
AMCG00016334 mRNA upstream 274099 16506297 ~ 16520198 (+) True AMCG00016334
AMCG00016329 mRNA upstream 309217 16484518 ~ 16485080 (+) False AMCG00016329
AMCG00016338 mRNA downstream 15645 16822917 ~ 16849192 (+) True AMCG00016338
AMCG00016341 mRNA downstream 44221 16851493 ~ 16862051 (+) True AMCG00016341
AMCG00016347 mRNA downstream 75432 16882704 ~ 16922938 (+) True AMCG00016347
AMCG00016349 mRNA downstream 161160 16968432 ~ 17007785 (+) True AMCG00016349
AMCG00016356 mRNA downstream 395734 17203006 ~ 17232829 (+) True AMCG00016356
TU15937 other upstream 308294 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 308294 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 309149 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 2355691 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 3157296 13635442 ~ 13637001 (+) True G12351
TU16114 other downstream 309521 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 7272745 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 7727746 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 8200690 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 8325926 25133198 ~ 25133879 (+) True G14361

Expression Profile