RNA id: AMCG00016346


Basic Information

Item Value
RNA id AMCG00016346
length 1329
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00016346
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16736104 ~ 16740028 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAAATGTTTCATTAGTTTGGAACATCTTAACGTACCAACAAGAAATCAAGATCACAATGAATTGGGTGACAACACTGAAAATGATCATTGTTCTCTCAACTTGCTTTTTCTTCATCTCTGTGAACGGCATGATGCTGTTCGTCCTGAGGAGCAAGCCCTCCTTCAGAGAGACCCCCCGCTACATCCTGTTCGCCCACATGCTCCTCAACGACTCCATTCACCTGCTGATCAGTATGTTGCTGTATATCCTTGCCATGCTGTATCTGCACCTCGTCAGGGCTGTGTGTGCGGTGCTTGTACTACTGTCCAGCACCACCTTCTATAACACTCCTCTAAACCTCGCTGTGATGGCTCTTGAGCGCTACATAGCTATCTGCTTCCCACTGCGGCACAGTGAGATGGCTACCCCTCAAAGAACTGGAGTTGCCATAGCCGTGGTTTGGTTTCTTGGCTCTGTAAACCACCTCATTGATGTTTTTGTTCCTCTGATCACAGAACCCTCTTTTTTACTGACGCCTGTTTTTTGCACACGTGAacagattttaatgtttaaatggcaGGCCAATGTCTATCAAGGAttcacagctttttattttgtgtgcgtGGGACTCATTCTCGTGTTCACGTATGTTGCCATCATGCTGGAGGCCAGGTCTGTCTCCTCTGACAAAGCTTCAGTGACCAAGGCACGCAATACAGTGTTACTGCACACAATCCAGCTGTGCCTGTGCCTCACCTCCTTCCTGTATGGAGTGATAGAAGCCCTGATCGCAAGGATGGATGCGTCTGTCTTCATTCACCTGCGGTACATGAACTTCATTGTTCTCCTCATTCTGCCCAGATGTTTAAGTCCATTAATATACGGTTTAAGAGATGAGAGTTTAAAgacaatttttaaatattacttaaCATGTGGTAGCAAGAAAGTAAAGCCTATGACAAATGTTTCATTAGTTTGGAACATCTTAACGTACCAACAAGAATCCAAGACCACAATGAATTGGGTGCCAACACTGAAAATGATAATTGTTCTCTCAACTTGCTTTTTCTTCATCTCTGTGAACAGCATGATGCTGTTCGTCCTGAGGAGCANNNNNNNNNNCAGAGAGACCCCCCGCTACATCCTGTTTGCCCACATGCTCCTCAATGACTCCATTCACCTGCTGATCAAACCCTCTATTTTACTGACACCTGTGTATTGCAAATATGAacagattttaatgtttaagtGGCAGGCCGATGCCTTTCAAGGAttcacagctttttattttgtgtgcgtGGGACTCATTCTTGTGTTCACGTATGTTGCAATCATGCTGGAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15978 lncRNA upstream 60915 16674893 ~ 16675189 (+) True G12907
TU15977 lncRNA upstream 63608 16672132 ~ 16672496 (+) True G12906
TU15972 lncRNA upstream 112137 16623683 ~ 16623967 (+) True G12901
TU15967 lncRNA upstream 127119 16608718 ~ 16608985 (+) True G12896
TU15957 lncRNA upstream 202723 16533104 ~ 16533381 (+) True G12886
TU16002 lncRNA downstream 75549 16815577 ~ 16816331 (+) True G12929
TU16052 lncRNA downstream 136317 16876345 ~ 16876902 (+) True G12966
TU16121 lncRNA downstream 393286 17133314 ~ 17133530 (+) True G13019
TU16123 lncRNA downstream 403582 17143610 ~ 17146998 (+) True G13021
TU16296 lncRNA downstream 857322 17597350 ~ 17599581 (+) False AMCG00016379
AMCG00016337 mRNA upstream 172886 16557238 ~ 16563218 (+) True AMCG00016337
AMCG00016334 mRNA upstream 215906 16506297 ~ 16520198 (+) True AMCG00016334
AMCG00016329 mRNA upstream 251024 16484518 ~ 16485080 (+) False AMCG00016329
AMCG00016330 mRNA upstream 252162 16465451 ~ 16483942 (+) True AMCG00016330
AMCG00016323 mRNA upstream 274789 16446628 ~ 16461315 (+) True AMCG00016323
AMCG00016340 mRNA downstream 43438 16783466 ~ 16786942 (+) True AMCG00016340
AMCG00016339 mRNA downstream 54269 16794297 ~ 16807272 (+) True AMCG00016339
AMCG00016338 mRNA downstream 82889 16822917 ~ 16849192 (+) True AMCG00016338
AMCG00016341 mRNA downstream 111465 16851493 ~ 16862051 (+) True AMCG00016341
AMCG00016347 mRNA downstream 142676 16882704 ~ 16922938 (+) True AMCG00016347
TU15937 other upstream 250101 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 250101 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 250956 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 2297498 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 3099103 13635442 ~ 13637001 (+) True G12351
TU16114 other downstream 376765 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 7339989 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 7794990 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 8267934 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 8393170 25133198 ~ 25133879 (+) True G14361

Expression Profile