RNA id: AMCG00016348


Basic Information

Item Value
RNA id AMCG00016348
length 528
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00016348
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16929428 ~ 16938560 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCATACTGAGGCGCTGGAAGAGGAACTGGTTTGATCTGTGGGTTGACGGGAACCTACTATATTATGAAAATGAGAGCCGGAGAGACTACGAGAACAGAATCCGTTTGAAGCACAAATGTACCTCTGTCAAAGCAGGACTGGAATGCACAGgTGTGGACCCTCCAGAAGGCAAGCCCCAGGAGTGCCTCGTCCTGGTATACCTGAAGGATGGCTCTAAACTGGTGCTGTGTGCCGACAGTGAGGACGAGGCGCTAGCATGGAAGCTGGCATTACTGGAAGCAAGAGCAAACCCGGTGTACATGTATGATCCGTACGATGACGCCTACCACACCATTCCACTGGACAGCCACAATGCTGTCTACATCAGCCCTGCGTATCCAGGATACGGCTATGGAGGAACTCACCACGTGCTGGTGCACAGCGACCCCTGTGAGGGCGTGGGGACGCAGGTGGCTCTGGGGCTGCTGGCTGGCATGGCCACTGGGGCAGCGCTGCGCTCTCTCATGTGGATGCCCTTCTGGTTCTGC

Function

GO: NA

KEGG:

id description
K23857 PLEKHB; pleckstrin homology domain-containing family B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16072 lncRNA downstream 4756 16918566 ~ 16924672 (-) True G12978
TU16051 lncRNA downstream 61101 16866319 ~ 16868327 (-) False AMCG00016345
TU15992 lncRNA downstream 137759 16791423 ~ 16791669 (-) True G12921
TU15986 lncRNA downstream 179509 16749719 ~ 16749919 (-) True G12915
TU15973 lncRNA downstream 305522 16623683 ~ 16623906 (-) True G12902
TU16151 lncRNA upstream 303384 17241944 ~ 17246330 (-) True G13045
TU16154 lncRNA upstream 303384 17241944 ~ 17246330 (-) False G13045
TU16156 lncRNA upstream 303384 17241944 ~ 17246330 (-) False G13045
TU16168 lncRNA upstream 325041 17263601 ~ 17266135 (-) False AMCG00016360
TU16181 lncRNA upstream 345843 17284403 ~ 17286829 (-) True G13065
AMCG00016342 mRNA downstream 48837 16876272 ~ 16880591 (-) True AMCG00016342
AMCG00016345 mRNA downstream 59426 16866318 ~ 16870002 (-) True AMCG00016345
AMCG00016343 mRNA downstream 65036 16861180 ~ 16864392 (-) True AMCG00016343
AMCG00016344 mRNA downstream 107058 16811036 ~ 16822370 (-) True AMCG00016344
AMCG00016336 mRNA downstream 154556 16757415 ~ 16774872 (-) True AMCG00016336
AMCG00016350 mRNA upstream 71171 17009731 ~ 17023094 (-) True AMCG00016350
AMCG00016351 mRNA upstream 101745 17040305 ~ 17071447 (-) True AMCG00016351
AMCG00016353 mRNA upstream 165414 17103974 ~ 17117735 (-) True AMCG00016353
AMCG00016352 mRNA upstream 184146 17122706 ~ 17123239 (-) True AMCG00016352
AMCG00016354 mRNA upstream 207433 17145993 ~ 17146985 (-) True AMCG00016354
TU16024 other downstream 68249 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 68249 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 68249 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2137459 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3370244 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 2152679 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3196637 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 6516532 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6760589 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 7372477 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile