RNA id: AMCG00016355



Basic Information


Item Value
RNA id AMCG00016355
length 4956
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00016355
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17233276 ~ 17240318 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGAAGTCTACATTATATTTCGAGACGCCGAAATCCTGCGTGAAAATATTCTTATGCGCCAATCCCGCGGATTCCCAAGAGGAGAGGAAAGCCCTCCGGGACACCGTGTACCCCAAAATAAGGGAGTACTGCCGGTACACCTACGGCCTGGAGTTCAGGGTCATCGACGCCTATGATGGCCTGGATCCCGATGACGTCCTCGACTCCAGAGCCCAGCAGGTTCGGCTGCAGCTGCTAGAGGAGTGCAGGGAGAGCTCTGCCGGACCTTTCTTTGTGGCTCTGATTGGGGAGCAGTACGGCGACCCCTGTCTCCCTGTGCAGATCGAGGTAGACGAGTTCCAGGAGGTGCTGCAGATGTGCCAGCAGGCCAGTGTGAGTACCCAGCTTCTGGATCACTGGTACCAGAGGGACGAGAATGCCATCCCACCTGCCTACTGCCTGCTGGACAAACAGGAACTGCTGCCCAACTACTACTGCCAGACAGACAAGAAAGCTAGAGAAAGGGATCGGCAGGAGTGGCAGGAAGCCTTCCAAGAAATGAATATGATTTTTCATGCCATTGTCTCCAGATGTATCCAAGAAGGAAAATTAGGCCCagagatggaaaataaatacttcactTCAGTCCTTGAAAGAGAATTGCGTTTCGCACTTGAAAACCGTTCCAACGAGGATGTCAGAAGGTGTCTATGTTACGTTCACAAGATCTTCAACATGAGCCGACAGAGGGAGAGGACAGCAGGACAACAGTCTGGACTCCTTAGCGACCCTGATCTGCAGGCCTTTTGCCACACCAAGTCCAATACCTTGCTCTGCAAACTGCGAGAAGACTTCCTGCCCTGTATGGTTGCTTCCTCTGAGCTCCAGGTGTACACTTCCACCACCACCTGTGAGCTTCGACAGGGCTACACCTCTGAGATGAGGCAGGGATACATAGAGGGCCTCTGCAAGCAGTTCTACACCAATGTGTTGAATCTCATTGACGTCACGGTCTCCAGAAACACGTCTCAGATCGACTCACTCACAGAAGGCATCCTGCAGCAGGCTGACTTGTGCAGCATCTATTCTCATCTCTACAGGATCCAGTGTGCTGAGGTGGAGCAGATTAAAACATACCTTACGCAGAAGGAGACCAAATATCCACTCATCGTGAGTGGAGGTCCTTGCACTGGAAAAACTGTGTTTCTTGCACACTGTGCTAAACAGGCAGACATTTGGCTCCGTGACAAGGATCCAGTCATCgttgttcattttattaaaggtgACAATGATACTCTGAAGCAGCTTCTCTCAAGTGTTTGTCAACAAGTGGCCGTTAGCTATGGTCAGCCATTGCTGTGCATCCCCAAAGATATCAGTCAGCTAAAAGAAGATTTTTTAAACCTTCTCAGTGCACCCTCTGAAGAGCGGCCTTTAGTTCTCATACTGGATGGTCTCGACCAGATCTCAGAAGCTTACAAATCTCAGAGCATTTGGTGGCTTCCCAGGTCTTTACCTCCCAATGTTAAGTTCTTAATTTCCACAGCACCCAGGAAGTTTGGCATTTTGCAGGCACTCAAGGCTCTGTACACTGATCAGTCTCAGTTTGTAGAATTGGCACCAAAAGAGAGGAAGGATTGCAGTAAGATGCTAACAGAGCTTCTTTTCTCTTCCAAAAGGAGGGTCACCTCAGGACAACAGATATATGTCAATAAAGCCCTGAATGACTGCAGCCTCACACTCTACGTTGAGTTGCTGCACAGGCAGGTGAGTCATTGGCGTTCTGATGTGGAGATCACAGGAGATTCAGTAAGAAAGGGAGTCCATGAGAATATTAAGTGGTTCCTTGACCAGCTTGAGgaaaaacatggaaaagagatgGTCTCCAAAGCCATATGCTATCTGACCCTTGCCAAGTCTGGAATCACAGAGACTGAATTAACTGATCTGTTGTCTTCAGAAGACAACGTGCTCATGCAGTTCCTCCCCCAGGAAGACCTGCCCTTAAAACTGAGGGTCCCTGAGTCAGCAGTGGAGAAGTTGCTGCTTGATCTGAAGGGCTTTCTGGTGAGACGGTATCTCTTGGGATCTCAGGTGCTGTTCTGGGTAAGCAGACACTTTCCACTGGTCATTTACAAGCTCTACCTCAGCTCTGATAAGAGAGTACAGGAGATTCACAATGCAATGTCCAACTACTTCAATGGCCGGTGGGCTTACGGCAGAGCCAAGCCTTTGATCATCAACCAGGGTCTCACAACACAAACCAAACGTTTGCTCTCTCCTCCCCAGGCTTTCTCAAACAGCCCTCTGGTTAAAATTTACATTGACAGACAGCAGCCGTCCCAGCCTTGGCTCTTTAAGTctttttttagtaatttaagGAAAACTCATGAACTACCGTTTCACTTGAAAGCAAGTGGTCGACTTGAGGAGCTGAGCAGGAGTGTGATGTTGTCTCTGGGCTTCCACCAAGCGATGCTGGAAGCTGGTCAGCTGAATGAACTTATCAATGAATTGGAAGAGACCTCACAGCTTGCTCTCTGTAAAGAGCTCAGACTTCTCGCTAGCATCCTGCGAAGTGCCACCTGCTTACTTCAGAGCCGCCCTGCAGACCTGACGATGGTCATTCAGATCAAATTGCTTCCATTCCTGGACATTTTCCCTGATTTGGTGAGCTACGCCAAGCAAATTTATCAGGAGGGCTTGAAGAAGTGTGGTGTCAGTGCTGTACGTTCTTCGGTCAGCTGTGTGCCTTCTATACGCACAGTCCTGCCAGGGGTGGACGTCTCCCCTATTGTTGATGTACTACAGACTCAGTGTGAAACAATAGCAATGCTCCTGGACAATGGTTGTGTTTGGGCATGGAAAGAAGATGTAGTGGATGGCTACAGACTGATTAACTCATCTGACTTACTGTTCTCCAGTGCCAAAAGTGCAGGAAATTTTCTCATGCtttcaacaaaatgtaacagaatGCTGTTGTGCAATATGGAGATGCCTACACTGATTTATGAAATAGATGCTCAGAAACCTGTTACCAGCTCTCCTGCAGCTGcggacactgcagtgcagggtTTCCTTATTGTTAACAGTAGGATTTTTGTATGGTTCCGAGATGCAAATTATGTCAGGATGTTTGACTTAAACACCGGAAGGCGACTTGGGCAGCTAGAGTGCCAGTATTGTGTCACATGTGTGTCATGTTCCTCCAATgaaaagtacatattttgtGGACAGGAGAAAAGCACAGTGTCCATTTTTGACATCCAGGATGAAGGGTTTCGTCTTGTTATGTCTTCCTCAAGCTCGGCAGGAACGTGTGTCATTGATGTACTGCATTCTGAGCTGAGAGGTGAAATGTCATGGGTGGACAGCTTTGGTAATGTTTTCGTGtggaatatacaaataatgGTTGAACCCACACTGGTGAAAGAGTGCTGCAACCTAGAGGACCAACAGAAGGTGTTGCACACTGAACATTCACCTGAGAACAGGACTTTCCTGATCTGTAAGCAGGCACACATTGTGCTGTGGGACACCTCCTCCTGGACAGTAAGTGACCAGTTTAAAGCCCCACGTAATAGAAGCTTTATCCAAGCTGTTCTCTCCAGCAACTGCTCTCTCATAATCGCTTCCCTAGAAAACTGTCAGTTCCTACTAGTTTGGAAAAGAATAACGGGACAGTGCATTTTACGTTTGGACATTGGCCACACCCAAGCCctgaaaatgatcaaatacCAATCAACCTTGGTGGCCATTGCAGCTAATGGATTCCTCACAGCTTGGGACTTGGATTTGATGTTGGGAGCTTCTTCAGTTTCCAAGACAGGAATAAAGATTAAAAGTGTTCTTGTCAGCTCCCAGGGGGAACACATTTATACAACCGATGGCTCGGATGGTGTGTTCAAGTGGGGCATGCTGACTGGCACCATAGAGGGCTGTTTCTGTCACGGGGACCCTGTTGAGCACTTTAAACTCACAGTGGCTGGTGAACATCTTGTCACTTCAGATTCCTCAGGGGACATTTACATCTGGAAGACGGACACAGGGGAAAACCAGCAGCGTATCCATGGTAATCACCCCTCCCATTTACTGATCACCCCCAACAGCCATTTTGTGGTGTCACTGTGTGAGAACAGTTTCTCCCGGGTTTGGAAACTCAACAGTGGCCATGTCGTGTGCAAGATTCATCTGTACCTGAAGAATGCAGTCATCACACCTGAGAGCACATTTGTTCTAGGGCTGCACAAGAGAGATCTCCTGGCTGTCAGTCTGTGGTCGGGCTGTATAAGCAAGAGGTTTTCCTGCTCTAGTGAATCTGATGTCATGGCCTTTCAGCCATTACTTGACTACACAGACTATGTGGCCTTAATCACCTCTTCAGGGGACCTGTACACCTGGAATCTTGCAGAGGAAACCATATGCCAGCAAGTTCAGTTATGTGTTCCCTCTCTAAACCAGCTGGACTTATTTCAGATCTCTTCAAGTGGAACATATGCTATGATCTCAACAGCTGGTGCCACCATTAGCATCATAGACACTCTAAACGGAAGGCTATATTCATTAGAGACGACAGCCCCCATCTTGTTTGTGAGCCTGACTGTATCGGGCAGCTACATTGTGTTCATTTGCGATGCTGAATCATCAAACTGTGTCTGTGACTTCCACTCCAAACCAGTTCTGAAGGTGGTCCAAGCCTCCAATGGGAGAAATGTAGGAGTTTGTTACCTATGCAAAAACCCTTCAGCCCTGACTGTTACTGATGACTCTAGTATTTATGTGGGATTTGAGGATGGCTCTGTGGGGATTTATGTGATTTCAGATGAAGCTGAGGGCAGGGTTAATGTCAAAAGACACATCAACCAGATAGGTGACAGGCAGCCCTACCTTAGTGAAGAGCCCAAAAGATGGCAGTCAATGGAATCCGCCAGTATTGTGTGGGTAGATTCTTCTACTGATCACCAACAGTGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU16123 lncRNA upstream 86278 17143610 ~ 17146998 (+) True G13021
TU16121 lncRNA upstream 99746 17133314 ~ 17133530 (+) True G13019
TU16052 lncRNA upstream 356374 16876345 ~ 16876902 (+) True G12966
TU16002 lncRNA upstream 416945 16815577 ~ 16816331 (+) True G12929
TU15978 lncRNA upstream 558087 16674893 ~ 16675189 (+) True G12907
TU16296 lncRNA downstream 357032 17597350 ~ 17599581 (+) False AMCG00016379
TU16327 lncRNA downstream 418439 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA downstream 437809 17678127 ~ 17680909 (+) True G13174
TU16326 lncRNA downstream 437809 17678127 ~ 17680909 (+) False G13174
TU16441 lncRNA downstream 1018950 18259268 ~ 18259834 (+) False G13266
AMCG00016356 mRNA upstream 447 17203006 ~ 17232829 (+) True AMCG00016356
AMCG00016349 mRNA upstream 225491 16968432 ~ 17007785 (+) True AMCG00016349
AMCG00016347 mRNA upstream 310338 16882704 ~ 16922938 (+) True AMCG00016347
AMCG00016341 mRNA upstream 371225 16851493 ~ 16862051 (+) True AMCG00016341
AMCG00016338 mRNA upstream 384084 16822917 ~ 16849192 (+) True AMCG00016338
AMCG00016359 mRNA downstream 1561 17241879 ~ 17246793 (+) True AMCG00016359
AMCG00016358 mRNA downstream 7359 17247677 ~ 17250675 (+) True AMCG00016358
AMCG00016357 mRNA downstream 11232 17251550 ~ 17263292 (+) True AMCG00016357
AMCG00016363 mRNA downstream 25908 17266226 ~ 17278723 (+) True AMCG00016363
AMCG00016366 mRNA downstream 42258 17282576 ~ 17288324 (+) True AMCG00016366
TU16114 other upstream 111344 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 747273 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 747273 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 748128 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 2794670 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 6839699 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 7294700 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 7767644 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 7892880 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 7910165 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile