RNA id: AMCG00016360


Basic Information

Item Value
RNA id AMCG00016360
length 2230
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00016360
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17263601 ~ 17266747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCATTCAGGATTGAGCACGGCCAGTTTCCTGTACCTCTGTGCAgaataaaaagtacaatttaCTCCATGAGAAAGCAAATCAAGGCAAGCTGGGGAATCAACCCCGACGCGCTACGAGGAGCAGCGGCCAGCGAGCGACTGATCTCCCGCGGACAAAAACATACCAGCAAAGCACCAAACATGATTCAGAATTAACCCATGCTTTCAAACTTTACCGGCAGAGTGGGAGCCTGGGGGGAAAGCGGCGCTGAGCAGCCTCCACCCCACAACAACAGAGCAGCGCTGCTCCAGCAGCAGCATAAGGGTCTCCATCACCACTGCTTTTTTACTACATCACAGCCCGCACAATGTCCGCGTTACCTGCCGCCGTCTCCTGCAGCGCTCTCTCCAGCTGCGGGAACGTCAACTCCGGCAGGTCCAGGGCTGCTCCATAGCGCTCCAGGAAAGAGCAGACCACGGCGAAGCTGGGGCACAAACCGGGGCAAGAACCCGCCGCTGCCGCCGAAGCAGCCATTTTTTTCCAATGGGGGTGCAAGAGACTGGGCTTGGAGGACCGAGGACGGCCCACAATACACCGCGCCAGGGTAGTGTTGTGATAGTGGTGGAGGACTCGCAGGCCGAGCCGCCACTGGCCCAGAGGTCTTTGCGCGGAAAGTTAAATCACTAATGTAAACAAGTGGATGCTGGATGGAGTTGATTTCAAATAGTGACGGTCGGTGTTGAATTCGCTGGTGGCCATAAATCACACCGAAAAAGTAGAAACTGGCTCatgttaatggacaccaatgTAATGTGCTGTGAAAGGTGTCCTTCTTGCTGTAGAGGTATAGTCCCATCGATGTCCTATGCTCTGCTAAATATGActtgatgtttttaaatgtgcagatatatgtatgtgcagggaatacaaacaaaaggaaatgttaACGTCGTAGTTCATGAACGTGTTTTTGTTGAGGGTGTCCACCACAGAGACCCTGTAATTGAAATTCATAGATTTCAGACCCTGTTCTGTTATAAAGTAAATATTCAATCCGAGCTTTCCTGTTCCTcctaccattttttttttttactgaacttTTTGCGTCAATATTTTATTAGCTTTATCCTTTTAAATTTGCGTATCAAGTTTTCGTTTACACATAATGGCTGGAGGGGCGGCGCTAGGGCGGGCAGCCGTGCGATTGGAGCGGGCAGCCGGGCGCTCGTCCCTGGAGGTGGGTGTGCGCACAGACGGGCTGTTTCTTCCCAAAGAGGGTGAACGACGGCCATCGTGCCTTGTTGGGTTAGTGCCAGTTTGCCTCCATGTCCTCTCCAGAGATTGCATCTTTATCATGGGGTCACATGAAGGTGAAAGGATGCTCCACCTCCTACAAGGACTGTAAAGTGTGGCCAGGGGGGAGTCGTGCCTGGGACTGGAGAGAAACTGGCACTGATGTAAGCCTGCAGGAGCATCTTTGTCACACCAgtgattatttaaatacttaagACAAACCATAAACAAATGTGAAGCCTCTTTTCCTCTtaaacatttcctttctttttgatAAATTGCTAGAGAATGCAAACAAAAGGTGAGGAACACAACATTATTAGTTTCCACTTTGAAGGTCCGAATTCAATACTTTGATCCATGAGCCTCTCTGCTGAGCTTTGATGTGTTTTGAGCCCAGACCGCTAGAATGATCTAATCGGAGGTATTTCTAATGCCACTCAGGAAGCAGGAGTGTAGCTGCTATTGTTCTTTATCTTGGTTGAAAGTTGGCTTTGAATAGTGCATTCAGGAGCCACGGTGTGATATGTGCCAATGTCCCCTCAGCACCATCCTGGAGTCCAGCCTGCTGATCTGGAGGAGGTCTTGAAGAAGGGGGTGAATACACTGGTGATTGGACGGGGCATGAGCGAGGCGTTGCAGGTGCCGTCCTCCACGCTGGATTACATACAGAAGCAGGGAGTGGACGTGAAGGTGTTTCAGACAGAGAAGGCTGTCCGAGAGTACAACACCCTGGCCGGGCAGGGAGTCAAGGTGGGAGGGGTCTTCCACTCAACCTGCTGAAGTGGCGAGATCTAAATGTCAGACAGGTCGCTGCCAAGAGCTCTTGAAGAAGGCCTGTTTCTGTGGTGTGTTACTCTGCATGGATAGAGCAGTGATCTGTATGAATGAAACTTTAATCTAAAAAGTAAGACTTCCAGCtattggtctttttttttgtttgagttgtaaaaat

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16151 lncRNA downstream 17290 17241944 ~ 17246330 (-) True G13045
TU16154 lncRNA downstream 17290 17241944 ~ 17246330 (-) False G13045
TU16156 lncRNA downstream 17290 17241944 ~ 17246330 (-) False G13045
TU16072 lncRNA downstream 338948 16918566 ~ 16924672 (-) True G12978
TU16051 lncRNA downstream 395293 16866319 ~ 16868327 (-) False AMCG00016345
TU16181 lncRNA upstream 17656 17284403 ~ 17286829 (-) True G13065
TU16213 lncRNA upstream 108519 17375266 ~ 17377539 (-) True G13091
TU16261 lncRNA upstream 227108 17493855 ~ 17494346 (-) True G13126
TU16264 lncRNA upstream 229176 17495923 ~ 17496347 (-) True G13129
TU16302 lncRNA upstream 271287 17538034 ~ 17540345 (-) False AMCG00016376
AMCG00016354 mRNA downstream 116635 17145993 ~ 17146985 (-) True AMCG00016354
AMCG00016352 mRNA downstream 140381 17122706 ~ 17123239 (-) True AMCG00016352
AMCG00016353 mRNA downstream 145885 17103974 ~ 17117735 (-) True AMCG00016353
AMCG00016351 mRNA downstream 192173 17040305 ~ 17071447 (-) True AMCG00016351
AMCG00016350 mRNA downstream 240526 17009731 ~ 17023094 (-) True AMCG00016350
AMCG00016361 mRNA upstream 26341 17293088 ~ 17294875 (-) True AMCG00016361
AMCG00016368 mRNA upstream 113684 17380431 ~ 17413600 (-) True AMCG00016368
AMCG00016367 mRNA upstream 160757 17427504 ~ 17460486 (-) True AMCG00016367
AMCG00016369 mRNA upstream 199936 17466683 ~ 17472931 (-) True AMCG00016369
AMCG00016375 mRNA upstream 208671 17475418 ~ 17490419 (-) True AMCG00016375
TU16024 other downstream 402441 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 402441 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 402441 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2471651 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3704436 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1824492 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2868450 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 6188345 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6432402 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 7044290 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile