RNA id: AMCG00016365


Basic Information

Item Value
RNA id AMCG00016365
length 2768
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00016365
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17462090 ~ 17465989 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatacaGGAAGATGCGCGTCAGCCTCCTGACAAGACCTGGACTACTCTTGCTGTTTTACTCATTGAACTCGACCAGTGGTCTTTCTGTGACGAACTGGGTGGCTCCATGCCAATGGGACTGGACTGGGGCTAATAACCTGACAGTAAACTGCACTGACAGGAGTCTGGAGGCCCCTGTCCCTGCCAGCCTGCCAGCCCAGGCCTATGCCATTGAGCTCAGTTTAAACACCATCACTCACATCAGACGGTCACACTTCCCTGTCCAGCCGCTGCAGGCAGTCAGACTCAACCTCAGCAACAACAGGATTGGGGAAATCCAAGACTGGGCTTTTGGGTGCTTCGTGAAGCTGGAAGTGCTTGACCTGAGCAGTAACAGGCTCAGCACCCTCGGGAGGGACACTTGGTGGAGGCTTGGCAACCTGAAGGAGCTGCGTCTGGGACACAATGTCATAAAGACAGTTCACAGCTCTTCATTTGCAAGCCTCGTCAGAGCAGAAACACTGTGGCTGCAGAATAACAGCCTCGTTAACATCCCGCAAGCAGTGAAGAGGATGTCTTCTCTCCGagtcctctctctcgctcagaATCGGATCTTCTCTGTTGATTCTGGAAGTCTCCAAGGCTGCTCAGACCTGGCTATACTGCAGCTGGAGCACAACCTAATCTCCAGAGTGTCAAAAGATACCTTTGAGGGCCTTGACAAACTGAAGGTAATGACAGGGGGGCCCAGAGTTACAGAAGACCACCATCCTCAGACCGCTTttagacagaaaatattaagagacagaaatGTGCTAAACCTGAGCTTCAACATGCTCCAGACCACACAGCCTGCTGCCTTTGAGAAGCTTTGGGACCAGGATGCAGATGTAATGATAGATGGCAACCCCTGGAGGTGCGATTGTAAGCTGAAGGAGCTGCGAGAGCTGGCACCCACACTGCTGTCTGACCAAGTCCAGTGTCAGGGAGGTCCACTGCACGGCTTTCAACTGTCCGCACTGAGACCAGAGCAGCTGCAGTGCAGTCGGCCCCTCGTGGTGCTAAACGCCATCACTATTCAGCTGCCTGCGGACAGAAGTTCAAAACTGCCATGTACAGCAAACGGTCTGAAAGGTCAAGTTCTGTACTGGGAGACTCCATTTGGGCGACTGCGGAATAACTACCTTTACGGCACTCTGGATCCGGTTACGGTGCTGCGAGATGGAAGTTTACAGATTACAAAGTCTGCCCTCTATCACACTGGGCTGTATTACTGCTTCTTGAGTGACAGGGAACGAAGAGCGATAATCCCCTACCGAACTGATGTCAGGGAGAGGAGTAACAGAGAGGCCAGACTCCGCAACAAAAGAGAAACCAGTACAGATCCAGAGACGGTCTCCGAAGAGCTCTTTATTTCTATAGTCACCATTTCGGTCTTGGTTGCTGCCTTAGTGGGTTTTGTTCTTGGTGCCTTCAGCAGGTCGTACTTCAATAAGTACTGGAGACAAATAAAGCAAAGGCAAGTTGTCAGAGATGATCCAACCATGAATTTGGAACCCCTCAcaagacaacacaaaaacatggaTTTGAGTGAGGAACGCATAGGTACAGCCAATAAGACTAGAATCTATGAGACACTTTCACAAGCCAAGAGGGCAGAGCAGGGCATCTCCCCCTCTGAAGGCACTCGGGCTGGGCATGTTTCTGTTGAAGGCGAGTTGCCCGGTGTTTCCGGAGAGGGTTGTGTGGCTCCCTGGCGGCCATATGCTACGCTGAACTCGGATGCACAAACTGCAAAGTGGGTGACCTTTGACAGTAGCACAGGTAACACAGTGCCAGCCTGGGAGTTCAGCACTGAATCAGGAACTACCGAATATCCCCAACTGGTGTTCCCTCACAGCCCAGACATCGCTGAGGAGACACCCTGTGAGGAAAGAAAGATGTTCCCAAGTCAAGATTGTTACAGAAGAACTGATTCAGATGCTTCTACTCCAACTTCCTTTCCAAAAACAAGTGTGAAATCTGATGACTTTGGAAACCCAGCAGAAATGGGGGAACACAGCAAGGAAGACGACTACATTGTCTACCCTGTGAAAGACACTTACAGACCCGGTATCGACCCATGGTCCTCTGGTGACAGTTTTGACCATAAATCCATCGTTCCAGAGCAAAGCCAGTACACACCATCAGCAGCACAGATCCTTGAAACACCAggagaaactaaacaaacccaAGTAGATCACTTTGGTTTAGAAAGGAGGCCGAGCGCAGAAGAAATGCTTATTCCACAAGGAGTctctgaggaagaggaggcatCGATGGGATTTTGTATTGATCTTACACAGCTTGCAATGGATGAAGATGCAAGTGACTGCAGAGTGACTCTTGGCGATAGCACAAGTCCTGAGCATACATCTGTGAAAGGCAGCGACACTGAAGAGGGATGGGAAGGCAACAAGGAAACACACGCTGCCAAGGTGAAGGAGAGCGACAGCAACGTGGATTCTAATGGGGAGACAGAGGTTGGAGAGAAGCCAGCTGAACAGGAACAAAGTATGACTCAAGACAACCAGGACTCTCTCACGGCAGCAGACAGCAGGGCCCGGGCCCACTCAGCCAGACGCAGAGTTATTAGGCTCTACAACTATGACGATGAAGGCAAACTCTACGACCATATTAAGGAATCTGAGGAGTACGCTTGCACACCAAGGCAGAAGCAGAGATCACAGTCCCTGACGCGACTCAGTGCCATAATGAATGCAGGGATGGCACCCGACTTCAGCGCGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16123 lncRNA upstream 315092 17143610 ~ 17146998 (+) True G13021
TU16121 lncRNA upstream 328560 17133314 ~ 17133530 (+) True G13019
TU16052 lncRNA upstream 585188 16876345 ~ 16876902 (+) True G12966
TU16002 lncRNA upstream 645759 16815577 ~ 16816331 (+) True G12929
TU15978 lncRNA upstream 786901 16674893 ~ 16675189 (+) True G12907
TU16296 lncRNA downstream 131361 17597350 ~ 17599581 (+) False AMCG00016379
TU16327 lncRNA downstream 192768 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA downstream 212138 17678127 ~ 17680909 (+) True G13174
TU16326 lncRNA downstream 212138 17678127 ~ 17680909 (+) False G13174
TU16441 lncRNA downstream 793279 18259268 ~ 18259834 (+) False G13266
AMCG00016370 mRNA upstream 22306 17439311 ~ 17439784 (+) True AMCG00016370
AMCG00016362 mRNA upstream 84774 17355232 ~ 17377316 (+) True AMCG00016362
AMCG00016364 mRNA upstream 120132 17321342 ~ 17341958 (+) True AMCG00016364
AMCG00016366 mRNA upstream 173766 17282576 ~ 17288324 (+) True AMCG00016366
AMCG00016363 mRNA upstream 183367 17266226 ~ 17278723 (+) True AMCG00016363
AMCG00016371 mRNA downstream 40475 17506464 ~ 17513994 (+) True AMCG00016371
AMCG00016373 mRNA downstream 48822 17514811 ~ 17528068 (+) True AMCG00016373
AMCG00016372 mRNA downstream 62582 17528571 ~ 17532364 (+) True AMCG00016372
AMCG00016378 mRNA downstream 72098 17538087 ~ 17559799 (+) True AMCG00016378
AMCG00016379 mRNA downstream 96429 17562418 ~ 17599579 (+) True AMCG00016379
TU16114 other upstream 340158 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 976087 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 976087 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 976942 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3023484 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 6614028 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 7069029 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 7541973 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 7667209 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 7684494 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile