RNA id: AMCG00016370


Basic Information

Item Value
RNA id AMCG00016370
length 474
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00016370
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17439311 ~ 17439784 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atGGCCTCGGTACTAGAGCTGCCCTTCCAGGAAGACACCCAGCTGACGGAGGTCATGCGTCTGAGGGTGCAGAGCCTGCAGCAGCGCAACCACAGGCCCCAGGACGGCGAGAGGCTGCTGCGGCCCCAGGAGGTGGTGTACCGCCTGGATTTCTCGCAGCAGAACCTGCGCTTCCAGAGGTGGAGCATCCAGCTCTCCGTACCGGGCAAGATCACCATCACGGGCATCTCCCAGCTCTGGACGCCCGACCTCACCAACCTCATGACCAGGCAGCTGCTAGAGCCGGCGGGCATCTTCTGGAAGAAATCCGGGGAGGAACAGGTGCAGTGCTACGAGGCAGACACCCAGGAGTTCGGGGAGCGGATAGCAGAGCTGGCCAAAATCCGGAAAGTGATGTACTTCCTTTTATCCTTCGAGGACGGCACCGAACCGGCCAACATTAACTGCTCCATAGCCTTCAAGGCATCTCCGTAA

Function

GO:

id name namespace
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16123 lncRNA upstream 292313 17143610 ~ 17146998 (+) True G13021
TU16121 lncRNA upstream 305781 17133314 ~ 17133530 (+) True G13019
TU16052 lncRNA upstream 562409 16876345 ~ 16876902 (+) True G12966
TU16002 lncRNA upstream 622980 16815577 ~ 16816331 (+) True G12929
TU15978 lncRNA upstream 764122 16674893 ~ 16675189 (+) True G12907
TU16296 lncRNA downstream 157566 17597350 ~ 17599581 (+) False AMCG00016379
TU16327 lncRNA downstream 218973 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA downstream 238343 17678127 ~ 17680909 (+) True G13174
TU16326 lncRNA downstream 238343 17678127 ~ 17680909 (+) False G13174
TU16441 lncRNA downstream 819484 18259268 ~ 18259834 (+) False G13266
AMCG00016362 mRNA upstream 61995 17355232 ~ 17377316 (+) True AMCG00016362
AMCG00016364 mRNA upstream 97353 17321342 ~ 17341958 (+) True AMCG00016364
AMCG00016366 mRNA upstream 150987 17282576 ~ 17288324 (+) True AMCG00016366
AMCG00016363 mRNA upstream 160588 17266226 ~ 17278723 (+) True AMCG00016363
AMCG00016357 mRNA upstream 176019 17251550 ~ 17263292 (+) True AMCG00016357
AMCG00016365 mRNA downstream 22306 17462090 ~ 17465989 (+) True AMCG00016365
AMCG00016371 mRNA downstream 66680 17506464 ~ 17513994 (+) True AMCG00016371
AMCG00016373 mRNA downstream 75027 17514811 ~ 17528068 (+) True AMCG00016373
AMCG00016372 mRNA downstream 88787 17528571 ~ 17532364 (+) True AMCG00016372
AMCG00016378 mRNA downstream 98303 17538087 ~ 17559799 (+) True AMCG00016378
TU16114 other upstream 317379 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 953308 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 953308 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 954163 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3000705 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 6640233 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 7095234 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 7568178 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 7693414 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 7710699 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile