RNA id: AMCG00016371


Basic Information

Item Value
RNA id AMCG00016371
length 2192
RNA type mRNA
GC content 0.42
exon number 9
gene id AMCG00016371
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17506464 ~ 17513994 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGTTGCCTGCGAGAATGCAATGATTTCTCACACACGCAAGATAAAAGCCAAAAAAAGGGAACATGGACGGAAAACACAGTTACAGGCTCCTTCAGAAGATCATGCAGCCAAACGAGGAAAGCGCCATTAATCCTGCTCACGGGGCCAGTGGTGGGAATGGGTTTCTTAGCATGTTCCACAAAGACCGGCTAAAGGCAGTTTTTACATGGCAACTTTTAAAGACAATAGCCCTAGGTCAAGGGTTATCGGTACTAATATGTGGGACAGCAGTCTCTAGCCAGTACCTGACAGATGTTTTCAAGGTCTACACTCCAATGCTGCAGAGCTTTATTCATTATGCCTTATTATTACTGACATACACTTCAATGCTGGCCTTCAGAAAAGGGAATGAAAATCTTTTGCAGATTTTAAAGGCAAAGTGGTGGAAATACATGTTGTTGGGAATTATTGACGTGGAAGCAAATTACATGGTTGTGAAGGCTTACCAGTTCACAACAATAACAAGCATACAGCTGCTGGACTGCTTTATAATTCCGGTGCTAATGGGCCTGTCCTGGTTCTTCCTGAAGACCCGGTTCAGGATAGTCCACTATGTGgccgtgtttgtgtgtttgctgggGGTCGGGGCCATGGTTGGGGCCGATGTGCTGGCTGGAAGAGACCTGGGCTCCACTCAAGATATTCTTTTAGGAGACTGTCTGGTTCTCATCGGTGCTTTCCTGTATGCCGTTTCCAACGTGTGCCAGGAGTACACGGTGAAAAACCTGAGCCGAGTGGAGTTCCTGGGCATGGTGGGGCTGTTTGGGACCTTGTTTAGCGGAATACAGCTagcTATACTGGAGCGTACTGCAATTAAGGATATCAAATGGACATGGCAAATTGGTGTGCTGTTTTCAGCATATGTTCTGTGTATGTTCACACTGTACAGCTTCATGTCTATAATCGTTAAAATGACCAGCGCCACGGCTGTCAACCTGTCCTTACTGACCGCTGATCTCTTCAGCTTCTTCTGTGGGCTGTTCCTCTTTCACTACAAGTTCTCAGGCCTGTACATTGTGGCCCTGGTGGTGATCATCATCGGGTTTGTTATGTATAACATGGTGCCGACTTCCACACTGGTGTCTGTGTCAGAGGTGGCTGGGACCGGGATCGACAATCCTTCTTCAGAGacggaggaggagagcagacaGGAAACGGCAATAGAGCTTTCTGTGGCAGATGCAGATGTATCAGAGGTGGTACAGGCCAGGACTGGGTCACCAGGCACATGAAATCGAGCCGAGTACATCTGTGGACCTTCAGGACTACGTgggagtgtttgttttatttgttacattttttagaCATTCTCAGACAGAGCACTCCGTAAAATACTGTTCATACGATTATTTAGTTTTctgctcagttttgttttttatttattgtttatttcctaGAAAAAGATGTAGTGAACATCAATAGAAAGTGAGGTATAGCAGAAAGGCTTATAGCCTAAATGTTTTGGATTATTTTAAGGCCTATGCTGAAATATAATGCACTATGAGGTATTGGTACACTGTGAAGTAGAAAAGAAGAACAGGTGTGTTTTCATTCAACATTGTGCATAACCTTTACACAAGAATATAATCCGTTTACCTCTGCAGTTGATACATTATTAACTAGCATGACTGAAATgtgggaaatattttttttttaatcagcacTGGTAAATATTGTTTAGTTGTCTTCCATTGCTGAAGGCCAGCACTGTTCAGGAAGGGCCTCGTCTTCTATGtctaaaaaaaatactaaaattatTCCACAACCTGTTGCTGAggtaatatgcattttatatgtacGGTGTTACTTCCAAATTACTATATTCACgttctttaatttttatatatatatatatagttttgggATTTGGGTACTATAGGTCAGTCGTGCAAATCTGATCCTCAAGAGTAACAGCACAgcaggttttaaaaatgaactgaaaattGAGAAGTTGTTTCAGTGAAGCAACTGTTTAGTTCGGTTGGTAATTAGGTgctcagattaaattaaaaatagatcaaATTGCCTTTAAAGACTGAACTGCACACCAGTAACATATGCACTTACTTTTCTGAAAGGCTTGTGccttatgcaaaaaaaaagcatgttttatatGACTTTTGTATTGATATTAAACTGCTgccaaaacaa

Function

GO: NA

KEGG:

id description
K15287 SLC35F1_2; solute carrier family 35, member F1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16123 lncRNA upstream 359466 17143610 ~ 17146998 (+) True G13021
TU16121 lncRNA upstream 372934 17133314 ~ 17133530 (+) True G13019
TU16052 lncRNA upstream 629562 16876345 ~ 16876902 (+) True G12966
TU16002 lncRNA upstream 690133 16815577 ~ 16816331 (+) True G12929
TU15978 lncRNA upstream 831275 16674893 ~ 16675189 (+) True G12907
TU16296 lncRNA downstream 83356 17597350 ~ 17599581 (+) False AMCG00016379
TU16327 lncRNA downstream 144763 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA downstream 164133 17678127 ~ 17680909 (+) True G13174
TU16326 lncRNA downstream 164133 17678127 ~ 17680909 (+) False G13174
TU16441 lncRNA downstream 745274 18259268 ~ 18259834 (+) False G13266
AMCG00016365 mRNA upstream 40475 17462090 ~ 17465989 (+) True AMCG00016365
AMCG00016370 mRNA upstream 66680 17439311 ~ 17439784 (+) True AMCG00016370
AMCG00016362 mRNA upstream 129148 17355232 ~ 17377316 (+) True AMCG00016362
AMCG00016364 mRNA upstream 164506 17321342 ~ 17341958 (+) True AMCG00016364
AMCG00016366 mRNA upstream 218140 17282576 ~ 17288324 (+) True AMCG00016366
AMCG00016373 mRNA downstream 817 17514811 ~ 17528068 (+) True AMCG00016373
AMCG00016372 mRNA downstream 14577 17528571 ~ 17532364 (+) True AMCG00016372
AMCG00016378 mRNA downstream 24093 17538087 ~ 17559799 (+) True AMCG00016378
AMCG00016379 mRNA downstream 48424 17562418 ~ 17599579 (+) True AMCG00016379
AMCG00016380 mRNA downstream 89729 17603723 ~ 17611160 (+) True AMCG00016380
TU16114 other upstream 384532 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 1020461 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 1020461 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 1021316 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3067858 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 6566023 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 7021024 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 7493968 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 7619204 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 7636489 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile