RNA id: AMCG00016379


Basic Information

Item Value
RNA id AMCG00016379
length 3028
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00016379
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17562418 ~ 17599581 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGCAATTTAGTTTCCGGCAGAGACATGGCGGCGTACGgaggaagttttgaaagtgtgAACAGCATCGATGAGAAGAAGGAGTTTAAGCGTAAAGCCAGGGAGGAGGTTCTGCGGAAGGCTAAAGAACAGTATGAGGAGGATGAGAGACGCAAGGAGCTCAAGCGGGCAAGAGGCGAGGACAAGTGGATGCTCCCGGAAGTGGACATGAGGCTCCAGCAACTAGACGAGGAGCATTCAGGCACgaccaagaagaagaaagagaagaagtCAAAAAAgagtaaaaaggaaaagaagaaaaaggagaagaaggagaaaaagaaggCCCAGGCTAACAACTCCAGTGACAGCTCTGCAgATTCGGAAGGTGATTGGGTAGAGGCCCCATCTGTTGCCAAACCACAGAAAACTGACAAATCATGGAAGATCCCAAAAGAGACACAAAATCCAGAAGACAACCGTCCGAGAGACGAGTGGATGACTTTTGATTTCTTGTCTATGAAAACCGTGTCGACAGCTGAGCTTCGGGCTGATAAGGAAAAGCAGAAGGAAGCAGAGAGAGACCGAGTGCAAGCAGTTGAACAGGCTGGACTGCATAAAAGAGAGCTGAACCCTTTCTGGAAGAATGGAGGGACAGGACTTCCTACAGAAGACAACAGTGTAGCTGCTGTTAAAAAAGCTGGAGTCATTAATGATGGAGGTCTGAGCTGGCTCAGGAAGTCTTACCAGCGCATGCAGGAGCAGGCCGAGCGAGAGAACCGCAGCTTGGAGGATGTGGTGTCCGAGAGATATGGGTCTATGGAACAGTTCCAGAAGAGGCTGGACGACGCAACCTTTCCACACAGGAGAAGAGACCGGGACATGGGGATGGAGCGGTGGAGAAAATCAGGCCCGCAGTCTTCACAGGAAGACCGTTCGTCAGCGGGCAGGTTCAGTCGTGATAAAGACGGACACCCCCACCGAGGAGACAGTGGGGGGCCCAGAGACTGGCACAGGGATAGAGCCTGGCACTTGCAGGGGGACCGGGAGCACGTCAAGCATGAGGATCACCGAATGGAGGGACAAGGTAGACGGTCTAGAGAAGAGTCTCAATCCAAACGAGAGAGCCCTCGGCTGGTGGGAAGACGTGACGAGTCCTCCTCCGCACATAGTGCCCTCAAGACCAGGTTCCTGAAGCCCACGGACGATGTGCCGGCTGGGAACTGGAGTCAGAAACCAGGCCTCTCTTCATCTCCAGCCCCCGCCAGGAACTCCATGTCATTCCGCAAGCCTGACTGTGATGACGACTGTGACGGCACCAGTCTTTTGTCTTGGAAAGAGAGCAGCTCAGATGCGCACACCAGAGAGATGGAGGTGGAAAGGGCTCCGAGAACGTCAGCATCGTCTGAGAGGGCTACTGGAAAAGACTGGAGAGACCGAGCAGAGGAGAGACCTGGAAATGCCACAGCGCAGAGGCAGCAGGCCGAACCCAGGCCGGTGCCGCACGAGTCTCCAGACGGTGTTGGCAAGGCCTCCTCTTCCAGAAGTGCTGCTgcgagggaggaagaggaggaggaggaggaggaagaggaggaggtgcCTGTCCTCACAGATGAGGAGATGAACAAGCTTGGAGCGAAGCTGGTGAAAGCAGAGCTGATGGGAAACATGGATATGGTTAACAAGCTGAAGGCCCAACTGGAGGCGGCTCGCAAGGCAAAGGACGGACAAGCTCAAAGGGTCTCTTCTGCGTCCATGTCGAGAAAGTCTGAGACCAAGGCTCCAGGTGCAGGGGAGCCGAACGAGGAGGTGGTTCTGTTCCGGACAGACCATTCTGGGCGAGCCTGGCCCGTCAACGCCTCATCTGAATCACTGCAGCCCAGAGGGGGACGGCGAAAGAAACAGACGATTGAGACCCATCGTGAGGGGGAGAGGGTGCGTTACTTCCAGGATGACGACAATGTGGACCTGAAGGAGAtggtgaagagagagaagatggGCACGGCCGAGGACCAGAACATGCTGTATTCCAGAATGGCATCAAAGCTGATGGGGAAGACGGACGGGGACTATCACACCCTGGACGACATGTTTGTGTCTAGCGCGGCTCAGAGGGAGCACTCCGGTCATGACGAGGAGAGGCAGCGGCTGCGGGCCATCCAGGAGCACCGGCGGCTGGCGGGGAGCATGGAGAAGTGTCCGTACTGCTTCGACAGCCCCGAGCTCTCCAAGCACCTCATCATCGCCATCGGCACCAAGGTGTATGTTTGCCTTCCGAATTGTCAATCTTTGGCAGAGGGGCACTGCTTAATTGTGCCCCTGCAGCACCACTCAGCAGCCACTGCCCTGGACGAGGACATCTGGACAGAGATTCAGATGTTCCGCAAGGCCTTGGTGAAGATGTTTGAAGATCAAGACCAAGACTGCGTGTTCCTGGAGACGCACATGAACCTCAAACGCCGCCATCACATGATCTATGAATGCGTTCCTCTGCCCAGAGAGCTGGGGGACATGGCTCCCATCTACTTCAAGAAAGCCATAATGGAGTCAGACGAGGAGTGGTCCATGAACAAGAAGCTGGTTGACCTCTCTTCTAAGGATATCCGACGAGCAGAAATCATCGGAGGCATGCTTGATCTGGAGCCGAGACGCTGGCGAAAACCGATCCGGGAGAATTTTGATGACCAGCGGAAGAAAGTGCTGCAGTTTTCTCAGTGGTGGAAGCCGTTTGACTGCACCAGGAATGACAGTTAACGTGTTTGAGTCCAGCAGATTGCAgattctcacctctctctcatGATCTCTGTAGTAATCTCCAGTTTAGGAGTTACTTACACTGTACCATAAACCTCCACCTTAAAGGACAGACTAAGATGAACATTGTTTAATGAATGACCTTGATATTAGACTGCATGGGAATAATACACAGGGAACAGTAAAATACGTTCTGATGTATTTTGACTTATTTTGTTACCTTGATGCAGAATTAATATTCCTAAACGTATATTAAGTTAAATGACATTTAAgccaaattaaactgaaacaaaaga

Function

GO: NA

KEGG:

id description
K24940 CWF19L2; CWF19-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16123 lncRNA upstream 415420 17143610 ~ 17146998 (+) True G13021
TU16121 lncRNA upstream 428888 17133314 ~ 17133530 (+) True G13019
TU16052 lncRNA upstream 685516 16876345 ~ 16876902 (+) True G12966
TU16002 lncRNA upstream 746087 16815577 ~ 16816331 (+) True G12929
TU15978 lncRNA upstream 887229 16674893 ~ 16675189 (+) True G12907
TU16327 lncRNA downstream 59178 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA downstream 78548 17678127 ~ 17680909 (+) True G13174
TU16326 lncRNA downstream 78548 17678127 ~ 17680909 (+) False G13174
TU16441 lncRNA downstream 659689 18259268 ~ 18259834 (+) False G13266
TU16438 lncRNA downstream 659962 18259541 ~ 18262343 (+) True G13266
AMCG00016378 mRNA upstream 2619 17538087 ~ 17559799 (+) True AMCG00016378
AMCG00016372 mRNA upstream 30054 17528571 ~ 17532364 (+) True AMCG00016372
AMCG00016373 mRNA upstream 34350 17514811 ~ 17528068 (+) True AMCG00016373
AMCG00016371 mRNA upstream 48424 17506464 ~ 17513994 (+) True AMCG00016371
AMCG00016365 mRNA upstream 96429 17462090 ~ 17465989 (+) True AMCG00016365
AMCG00016380 mRNA downstream 4144 17603723 ~ 17611160 (+) True AMCG00016380
AMCG00016377 mRNA downstream 24559 17624138 ~ 17638420 (+) True AMCG00016377
AMCG00016386 mRNA downstream 87277 17686856 ~ 17691260 (+) True AMCG00016386
AMCG00016387 mRNA downstream 275865 17875444 ~ 17887736 (+) True AMCG00016387
AMCG00016388 mRNA downstream 482343 18081922 ~ 18085103 (+) True AMCG00016388
TU16114 other upstream 440486 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 1076415 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 1076415 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 1077270 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3123812 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 6480438 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 6935439 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 7408383 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 7533619 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 7550904 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile