RNA id: AMCG00016381


Basic Information

Item Value
RNA id AMCG00016381
length 3449
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00016381
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17678130 ~ 17686737 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGCTGTCAGTCTGGCTGCGTTGTGCCCTAATGGTGGCAATTACTACAGAAGCGGCGTGAGAGAGGAGATACCGAAAGGCTGAACTTGTATTTCGGATCCCACAGGCTTAGGTGTACTCTGGAATTAACTAATAGTATAATGTATAGTACAGTGAAGGCGGTATAACAGCGTTACCTTAATGTAACGGCCTGAACAAGCGAATGTAATGGTCCgttatttgtgtgtgcagaGTTAAAAATATCATCTCCATTCATTGCAGTCCGACTACAGTTAGTGCCATGGCACCACAGGGCAAGGCCGGGCACATCCCAGCTGTCAGTCCGCTTCTCCATGCTTGCTTTGAGGAAGGCAGTCGGTAGAGATGGAGGGTGTGCGCTGGGCTTTCCGCTGCGGCTGCTGGGGCCCGGCGCGCTGCGAGTGGCTGCTGGCGGCTCGCTGTGtgcagagggaggagagggaccGGATCGGCCGCTTCGTCTTTGCCAAAGATGCAAAATCCGCCATGGTTGGCCGCTTGCTGATTAGGAAGCTAATTGCTGAAAAAATGGGGATTGTGTGGGATGAAATTCTTCTTCAAAGGACCGCCAAGGGGAAGCCTTTTCTGGCCAGTCCAGCTCCTGCCTCCTCCACGAACTACAACTTTAACATCTCGCACCAGGGAGATTATGCTGTGCTTGCTGCTGAGTCTGGCCTGCAGGATTGTTCCTTGGCGTTTTACAATCCCATTGCACCAGAGTTCACCATGCTGAGCTTCAGTGACCTTGTGTCGGGAGCCGTTCCCTTGACAGAAGAGGACCTGTCCTACTGGGAGAACTTCCAGAGCAAGCCAGACGCCCCCCGCCGTCAGAGCGCCACTTCCTGAGGGGTACGAGGTCTGTGCACGTGGGCCACCGTCCTCCCTGGGCTTTGACGgaccaaaaaagtaaaaacaaaagtgactGGTATTTTAATATCAGTGCTGCAaattgttttctgcaaatttaaaattaacCCTTTTTGGGGAATAGAAACCATGAACATGTTAATGATGTGAATGTGGTAATGTATACCTCAGCTTTATGAGATCTCTGCAGGCGGAGTTGGGCATTCTATGTTCACTTCGCAATAATTGCCGAAGCGATGGCTTTCTTAAAGAGGTTGCTGTTTGCTCAGTCAGCCGTATATGCTGTGCATTATGATGTCGTCTTTACACTGCTCAATTAGtaatagaataattaaaatgcaataaggTGCATTTGACCTTTCGATGAACACGTTTATAATTAAGGGGCAAGtttattcttgtttcttttctgtttaataGTGGTTCTTcattcaaaactaaattaattcaatttcaaCTGTATAGCAAACTTTCTAGTAAGGAACGCATCCAACTTTAATCTTCATGTTGTGGCCTTCAGGTCTTGATTTTTATTGATTCAATTATAGTGAAAGAAGCCATTTGCCCATTTATTGGTGGTGCATACTTTCAACTCCTTTTATCTCACTGTTTTTTGTgggcttttttttgttgtaattactCACATTACATCACATTTACTTTGTCTTGGCACATAAAATCAAACTATCCTACTGTGCCAAAggtaaaaccaaataattaaaGGATAATcaatatgtctctctctctctctctctctctctctctctctgtgcacttGGTtcctgtcctttttttttttactacataGTCTATTTTTTCCCTGAGACATTTAATAAACCATTAGAGGGTTTGTATTGGaggaaaagctttttaaaatccagCCCGATGGCTTTCCACAGCAGCCCACAAAGACAGTTTTCAATAGCTTTCTGCTGGAGGGTGGCTTTTCTGTGCCAGCTGTGTGAAATGAcgaacagattaaataaatatccaatTATCTCTCCTCTGCAGCAACAAAGGGCAACAGTATTGATGAAATGAGTTTTATCACTGAACAGTGAGTCATCATGTTCATGGCAGTATTTCACTTTCATGCTTTGGTAAAATTCACCAATATGAAATTACAAACCACAATAACACCCTTTTCAATAACTGACCAGGAACGGAAAGTTCATAAATTAATACTAAGATCCAGTAAATATTAAGACACACTGCACATTAGACTGCTTCATGAATATAACTTGTGAGGTTTGTttgcataattatatatatatatatattttattatcacaTGATGTATGCAAACCACACTGTTCTGTTTCAGAACACAACAGGTGTGCATGTGATGTAGATTCAagttatataataaaattatgtatacaattatcagtttaaaaaaaattccaTTGGATACTAATTGTAACATTATTTTCCACACAGAGATAAACTGAACAtgttatctttaatttattgtaatctgtttgatgtttttggttgaaaataataatattgaaataaaccaaTACTGGAATATAAATGTCCTCATCGTTATACAACTtaaataccatttaaattaataattgtgtgtgtgtgtgtatgtatatatatatatatatattcaggagATCTGGTGTCATTCACTCATTGTCATTCTAATAAAGTAGCAGCAAccattatttaatattgtgtatCACGACTGAAAAAAGCATAACTGTTGAAAATTGGTTAGAAATTAAAgtcactttatatatacattacctTTTGTACAcagagaaaacaggaaaactACCATTTGAGAAGATGAAATTGCTTATTAAAGGGATCTGTGGAGCTTTtctgaaattacatttgaatgcaaAGTGTGCCATCTAAAGTATGCCACGATAGAATGCACAAAGCAATTTATGTACGGGAATGCAACCTTGTGGGAATGCAATTCATAGTGTTGTTTTAGGATTTGCTCTTACTTTACATGTGGATTTACACCTCTGTGGCTGTCCTATGAGGCCTTCtgtcaaaataatacaacaaattacCATTTAGTTCAGTGTAGCACTGCAGACTAGTCTAATCTCTGTAAATTCAGTTTTGAGTTTTCaccttttattttcaatgcagcTGCCCTGTCACTGTCAGGTGTATGCCAGACGCCCCCCACCCTGTGTGTGATCTCTGTGTGTCATGTTACGTGTGAATTATCACTAGCCTCAAGGTGTAGATGTGCGTGTCCATGGTCtatttaaaccaaaaacattaatacatttgaagtgTTCTCACAAAAAAAATGCCTGCTATGTTGTGAAATAAGTCTGCTTTAAGAACTGGGAGCTGTGCTGGGCATTTTGTATCTCTTCATGATCCTTTAACATTATAGAAATGTTCTCCCCttcaaatgatttatttcatCTCAGTGTTCATAGGGGATAGATTCATAGCTGGAAGTTGATTTCCTCTGGTCGATTAAATGATATATGAAGCTTGTGTTTGAGAAATCGATCATCGAGTTTTCAGGAAGGGGTgtctatttttttcattgtcctgttcaaaataaaatgtctaaaaca

Function

GO: NA

KEGG:

id description
K06133 LYS5, acpT; 4'-phosphopantetheinyl transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16302 lncRNA downstream 137785 17538034 ~ 17540345 (-) False AMCG00016376
TU16264 lncRNA downstream 181783 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 183784 17493855 ~ 17494346 (-) True G13126
TU16213 lncRNA downstream 300591 17375266 ~ 17377539 (-) True G13091
TU16181 lncRNA downstream 391301 17284403 ~ 17286829 (-) True G13065
TU16425 lncRNA upstream 476050 18162787 ~ 18165770 (-) True G13254
TU16520 lncRNA upstream 1139457 18826194 ~ 18901976 (-) True G13334
TU16525 lncRNA upstream 1371668 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 1390631 19077368 ~ 19077823 (-) True G13341
TU16555 lncRNA upstream 1401487 19088224 ~ 19088632 (-) True G13366
AMCG00016376 mRNA downstream 136788 17538038 ~ 17541342 (-) True AMCG00016376
AMCG00016374 mRNA downstream 171687 17503880 ~ 17506443 (-) True AMCG00016374
AMCG00016375 mRNA downstream 187711 17475418 ~ 17490419 (-) True AMCG00016375
AMCG00016369 mRNA downstream 205199 17466683 ~ 17472931 (-) True AMCG00016369
AMCG00016367 mRNA downstream 217644 17427504 ~ 17460486 (-) True AMCG00016367
AMCG00016384 mRNA upstream 10192 17696929 ~ 17704385 (-) True AMCG00016384
AMCG00016385 mRNA upstream 29031 17715768 ~ 17716983 (-) True AMCG00016385
AMCG00016383 mRNA upstream 53895 17740632 ~ 17748750 (-) True AMCG00016383
AMCG00016382 mRNA upstream 99121 17785858 ~ 17787095 (-) True AMCG00016382
AMCG00016390 mRNA upstream 248399 17935136 ~ 17948136 (-) True AMCG00016390
TU16024 other downstream 816951 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 816951 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 816951 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2886161 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 4118946 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1404502 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2448460 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5768355 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6012412 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 6624300 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile