RNA id: AMCG00016384


Basic Information

Item Value
RNA id AMCG00016384
length 858
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00016384
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17696929 ~ 17704385 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCTCTCCGGCCGCATCGTTGGAGGCGTGTGGTGGTTCTTCACGCTGATAATTATTTCCTCCTACACGGCTAACCTGGCTGCGTTCCTCACTGTGGAGAGAATGGTCTCTCCGATTGAGAGTGCAGAGGACCTGGCCAAGCAGACTGAGATTGCGTACGGCACGCTGGACTCTGGATCGACAAAAGAGTTCTTCAGAAGATCAAAAATAGCAGTGTATGAAAAGATGTGGACTTACATGAAGTCGGCAGAGCCAACCGTTTTTACCAAAACGACGGCAGAGGGCGTCGCCCGCGTGCGGAAATCGAAGGGAAAGTTCGCTTTCCTGCTGGAGTCCACCATGAATGAGTATATCGAGCAGAGGAAGCCATGCGACACCATGAAGGTCGGAGGGAACCTGGACTCCAAAGGATATGGCGTGGCCACACCCAAGGGTTCTCAATTAAGAACTCCCGTAAACCTTGCCGTTTTGAAACTCAGTGAATCAGGCGTCTTAGAcaagctgaaaaacaaatggtggTACGATAAAGGGGAATGTGGACCCAAGGACTCTGGAAGTAAGGACAAGACAAGCGCTCTCAGTCTCAGTAACGTGGCTGGTGTCTTCTACATTCTGGTTGGCGGTCTGGGCTTGGCCATGCTGGTGGCTCTGATAGAGTTCTGTTACAAGTCCAGAGCAGAAGCCAAGAGAATGAAGCTAACCTTCACTGAAGCCATGAGAAATAAAGCCAGGCTATCGATCACGGGGAGTGTGGGAGAGAATGGCCGAGTCCTGACCCCCGACTGCCCCAAGGCTGTGCACACTGGACCCACCATGCGACAAAGTTCAGGACTGGCAGTAGTTTCGTCGGACTTACca

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16302 lncRNA downstream 156584 17538034 ~ 17540345 (-) False AMCG00016376
TU16264 lncRNA downstream 200582 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 202583 17493855 ~ 17494346 (-) True G13126
TU16213 lncRNA downstream 319390 17375266 ~ 17377539 (-) True G13091
TU16181 lncRNA downstream 410100 17284403 ~ 17286829 (-) True G13065
TU16425 lncRNA upstream 458402 18162787 ~ 18165770 (-) True G13254
TU16520 lncRNA upstream 1121809 18826194 ~ 18901976 (-) True G13334
TU16525 lncRNA upstream 1354020 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 1372983 19077368 ~ 19077823 (-) True G13341
TU16555 lncRNA upstream 1383839 19088224 ~ 19088632 (-) True G13366
AMCG00016381 mRNA downstream 10192 17678130 ~ 17686737 (-) True AMCG00016381
AMCG00016376 mRNA downstream 155587 17538038 ~ 17541342 (-) True AMCG00016376
AMCG00016374 mRNA downstream 190486 17503880 ~ 17506443 (-) True AMCG00016374
AMCG00016375 mRNA downstream 206510 17475418 ~ 17490419 (-) True AMCG00016375
AMCG00016369 mRNA downstream 223998 17466683 ~ 17472931 (-) True AMCG00016369
AMCG00016385 mRNA upstream 11383 17715768 ~ 17716983 (-) True AMCG00016385
AMCG00016383 mRNA upstream 36247 17740632 ~ 17748750 (-) True AMCG00016383
AMCG00016382 mRNA upstream 81473 17785858 ~ 17787095 (-) True AMCG00016382
AMCG00016390 mRNA upstream 230751 17935136 ~ 17948136 (-) True AMCG00016390
AMCG00016389 mRNA upstream 281046 17985431 ~ 18004633 (-) True AMCG00016389
TU16024 other downstream 835750 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 835750 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 835750 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2904960 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 4137745 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1386854 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2430812 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5750707 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 5994764 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 6606652 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile